Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J04
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A1TKS5 Cluster: TPR repeat-containing protein; n=1; Aci...    37   0.58 
UniRef50_Q59IS5 Cluster: Ataxia telangiectasia mutated; n=13; ce...    36   0.77 
UniRef50_Q582G5 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_A4EAW1 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_Q6FFD2 Cluster: Sensor protein; n=2; Acinetobacter|Rep:...    33   7.1  
UniRef50_Q84QT3 Cluster: Putative uncharacterized protein P0410E...    33   9.4  

>UniRef50_A1TKS5 Cluster: TPR repeat-containing protein; n=1;
           Acidovorax avenae subsp. citrulli AAC00-1|Rep: TPR
           repeat-containing protein - Acidovorax avenae subsp.
           citrulli (strain AAC00-1)
          Length = 1084

 Score = 36.7 bits (81), Expect = 0.58
 Identities = 21/42 (50%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +3

Query: 462 GIEEPP-AAKPCCPLHRAHRPRSPSTRCRAAAVPLSLYRNET 584
           G  EPP  A P CP  R H  RSP    RAA  P SL+RN +
Sbjct: 105 GAHEPPKTAVPPCPCARPHH-RSPPPPGRAAGRPCSLFRNSS 145


>UniRef50_Q59IS5 Cluster: Ataxia telangiectasia mutated; n=13;
            cellular organisms|Rep: Ataxia telangiectasia mutated -
            Danio rerio (Zebrafish) (Brachydanio rerio)
          Length = 2773

 Score = 36.3 bits (80), Expect = 0.77
 Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 4/82 (4%)
 Frame = +1

Query: 394  ALVNARRDSTECASRRGDEKDAGE*RSPPQRNRAALCIELIDRARPQRDAVL----LLCH 561
            ALVNA +D +   SR    K +    SP    RA +  ++ID  R +R  ++    +LC+
Sbjct: 2283 ALVNANKDDSFSRSR--SSKSSARQPSPLDLERAEVARKIIDVVRKKRAKMVKDIEMLCN 2340

Query: 562  SHFTATRPSDSTYPSHKHAVPI 627
            ++ T      S + + K A+PI
Sbjct: 2341 AYITLAYMDASRHKTEKKAIPI 2362


>UniRef50_Q582G5 Cluster: Putative uncharacterized protein; n=1;
           Trypanosoma brucei|Rep: Putative uncharacterized protein
           - Trypanosoma brucei
          Length = 1178

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 15/28 (53%), Positives = 15/28 (53%)
 Frame = +3

Query: 456 CGGIEEPPAAKPCCPLHRAHRPRSPSTR 539
           C G   PP A P  P  RAHRP S S R
Sbjct: 36  CNGSPSPPIASPSSPSLRAHRPNSRSFR 63


>UniRef50_A4EAW1 Cluster: Putative uncharacterized protein; n=1;
           Collinsella aerofaciens ATCC 25986|Rep: Putative
           uncharacterized protein - Collinsella aerofaciens ATCC
           25986
          Length = 417

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 20/46 (43%), Positives = 26/46 (56%)
 Frame = +1

Query: 319 QKFTWRARSIAPQ*KAARQLRRRHDALVNARRDSTECASRRGDEKD 456
           Q+    +R+ A Q +AAR+LR R DA V    +  E AS   DEKD
Sbjct: 122 QRIERASRATAGQIRAARKLRGRIDAGVQVTLEQLEAASAFEDEKD 167


>UniRef50_Q6FFD2 Cluster: Sensor protein; n=2; Acinetobacter|Rep:
           Sensor protein - Acinetobacter sp. (strain ADP1)
          Length = 526

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +3

Query: 96  TGCSTSLIQSHSKINHIKLTVSGQDASTCFHLGCSV 203
           TG    L  S  ++NH KLT   Q+   CF + CS+
Sbjct: 487 TGLGLYLSHSLCEVNHAKLTYVEQEKGACFRIQCSI 522


>UniRef50_Q84QT3 Cluster: Putative uncharacterized protein
           P0410E11.130; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           P0410E11.130 - Oryza sativa subsp. japonica (Rice)
          Length = 95

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 556 CHSHFTATRPSDSTYPSHKHAVPIATSWTTSMSK 657
           CH+H    R     +   K  +P++T WTTS S+
Sbjct: 39  CHAHHQVVRMCFQDFDGKKIGMPLSTGWTTSTSR 72


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 653,476,204
Number of Sequences: 1657284
Number of extensions: 12588504
Number of successful extensions: 33465
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33445
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)