Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J02
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex ...    27   2.2  
SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces po...    27   3.8  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   5.1  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    26   6.7  

>SPAC24H6.06 |sld3|mug175|DNA replication pre-initiation complex
           subunit Sld3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 668

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 417 RVESENIQANKRILRTPH-FPTHSTLTADTD 328
           R++S+  QAN+R  + PH F TH  +++  D
Sbjct: 150 RIQSDASQANERESQAPHSFVTHDLISSSKD 180


>SPBC83.03c |tas3||RITS complex subunit 3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 549

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +2

Query: 566 NNKNRTKSIKKFESSRHANVERXKQIRTCHATYC*EKREIYHSSNKQYYPNTDNG 730
           +N NR    + ++  ++  V R       + +Y  + R   + S +++Y N D G
Sbjct: 299 DNFNRPSQQEDYDKPKNTQVSRSSNHHRRYDSYHPDSRSDSYRSKREHYDNRDTG 353


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/61 (22%), Positives = 23/61 (37%)
 Frame = +2

Query: 29  PTTAPGAXVLSAYDRLHNQQPAASALTGAVAPDAPTRIADNTTRIQKKNKVHYSRSELSN 208
           P  +P A   S+      +QP    ++  V   +   + D  T+I   N  HY    L  
Sbjct: 213 PLKSPDAVAYSSETVSDEKQPTEHPVSANVPAKSEKAVCDENTKISLTNTEHYKFHSLRG 272

Query: 209 E 211
           +
Sbjct: 273 D 273


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 566 NNKNRTKSIKKFESSRHANVERXKQIRTCHA-TYC*EKREIYHSSNKQYYPNTD 724
           +N N T+   K  SS  A+V+  +      A     E     HS+NK+ +PNT+
Sbjct: 121 SNSNSTEDASKPTSSDTASVKETENSDPKSAENEVLEGETTQHSNNKEAHPNTE 174


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,740,574
Number of Sequences: 5004
Number of extensions: 49119
Number of successful extensions: 155
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)