Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J02
         (760 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0248 + 16042870-16043207,16043288-16043491,16043630-160436...    30   1.7  
12_01_0202 - 1513835-1514282,1514506-1514571,1515420-1515508,151...    28   7.0  

>09_04_0248 +
           16042870-16043207,16043288-16043491,16043630-16043687,
           16043806-16043868,16044282-16044332,16044811-16044838,
           16045251-16045366,16045463-16045552,16045638-16045769,
           16046071-16046223
          Length = 410

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
 Frame = +3

Query: 30  PPPHRVLXCSRRMIGYTTSNLRHQLSP-------AQSHLTRRRVLPTTQREYKKKIKCIT 188
           PPPH  + C+ R  G  T + R  L P       A +     RV P   R Y ++  C+ 
Sbjct: 24  PPPHARILCAHRTKGVATLSCRASLGPDGSLAGLAAAAAAAPRVEP-RGRPYLREHSCLI 82

Query: 189 AVPSYRTRNSEAEKK 233
             PS R R   A  K
Sbjct: 83  FPPSPRGRRPLAVVK 97


>12_01_0202 -
           1513835-1514282,1514506-1514571,1515420-1515508,
           1518011-1518352
          Length = 314

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 12  WRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHL 125
           W  F  P  H +L  +   + +TTSN    LS AQ H+
Sbjct: 70  WERFLPPDYHSILARADDPVDFTTSNKELFLSLAQDHV 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,045,167
Number of Sequences: 37544
Number of extensions: 324669
Number of successful extensions: 858
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 840
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)