Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_J02
(760 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator su... 31 4.5
AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein. 31 4.5
AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein pro... 31 4.5
AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein pro... 31 4.5
AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein. 31 4.5
>AF201422-1|AAF21439.1| 2296|Homo sapiens splicing coactivator subunit
SRm300 protein.
Length = 2296
Score = 31.1 bits (67), Expect = 4.5
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 1943 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVT 2002
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R S ++R
Sbjct: 2003 RRRS-RSRTSPVTRRR 2017
>AC004493-2|AAC08453.1| 1791|Homo sapiens KIAA0324 protein.
Length = 1791
Score = 31.1 bits (67), Expect = 4.5
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 975 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVT 1034
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R S ++R
Sbjct: 1035 RRRS-RSRTSPVTRRR 1049
Score = 30.7 bits (66), Expect = 6.0
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 987 RRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVT 1046
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R A ++R
Sbjct: 1047 RRRS-RSRTPPAIRRR 1061
>AB016092-1|BAA83718.1| 2752|Homo sapiens RNA binding protein protein.
Length = 2752
Score = 31.1 bits (67), Expect = 4.5
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 1943 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVT 2002
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R S ++R
Sbjct: 2003 RRRS-RSRTSPVTRRR 2017
Score = 30.7 bits (66), Expect = 6.0
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 1955 RRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVT 2014
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R A ++R
Sbjct: 2015 RRRS-RSRTPPAIRRR 2029
>AB016091-1|BAA83717.1| 1275|Homo sapiens RNA binding protein
protein.
Length = 1275
Score = 31.1 bits (67), Expect = 4.5
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 466 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVT 525
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R S ++R
Sbjct: 526 RRRS-RSRTSPVTRRR 540
Score = 30.7 bits (66), Expect = 6.0
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 478 RRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVT 537
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R A ++R
Sbjct: 538 RRRS-RSRTPPAIRRR 552
>AB002322-1|BAA20782.3| 2800|Homo sapiens KIAA0324 protein protein.
Length = 2800
Score = 31.1 bits (67), Expect = 4.5
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 1991 RRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVT 2050
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R S ++R
Sbjct: 2051 RRRS-RSRTSPVTRRR 2065
Score = 30.7 bits (66), Expect = 6.0
Identities = 23/76 (30%), Positives = 32/76 (42%)
Frame = +3
Query: 9 RWRSFSRPPPHRVLXCSRRMIGYTTSNLRHQLSPAQSHLTRRRVLPTTQREYKKKIKCIT 188
R RS SR PP R T R + SP +R R P T+R + + +T
Sbjct: 2003 RRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVT 2062
Query: 189 AVPSYRTRNSEAEKKR 236
S R+R A ++R
Sbjct: 2063 RRRS-RSRTPPAIRRR 2077
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 96,329,296
Number of Sequences: 237096
Number of extensions: 1740094
Number of successful extensions: 4149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3955
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4149
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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