Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_J02
         (760 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    25   1.0  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    25   1.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    23   2.4  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    23   3.1  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    23   3.1  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   4.1  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    21   9.5  
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    21   9.5  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 141 LPTTQREYKKKIKCITAVPSYRTRNSEAEKKRVFFFFE 254
           L +++R+Y++K+K +    +YR    E  ++R+  +FE
Sbjct: 381 LDSSRRQYREKVKQVEEYMAYRKLPREM-RQRITEYFE 417


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 11/38 (28%), Positives = 24/38 (63%)
 Frame = +3

Query: 141 LPTTQREYKKKIKCITAVPSYRTRNSEAEKKRVFFFFE 254
           L +++R+Y++K+K +    +YR    E  ++R+  +FE
Sbjct: 349 LDSSRRQYREKVKQVEEYMAYRKLPREM-RQRITEYFE 385


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 360 ESEASGVCACSLEYFHFLLDDGTHRTMIPVI 452
           ES  SG  A   EY H     G H +  P++
Sbjct: 497 ESTCSGEVASLTEYHHVAPPSGHHASSAPLL 527


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 69  SYAESTIAPGAVVGVKRISIGRP 1
           S+ E T+ PG  V +K  + G P
Sbjct: 427 SFIEQTLQPGPAVSLKCSAAGNP 449


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
           AbsCAM-Ig7A protein.
          Length = 1919

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 69  SYAESTIAPGAVVGVKRISIGRP 1
           S+ E T+ PG  V +K  + G P
Sbjct: 427 SFIEQTLQPGPAVSLKCSAAGNP 449


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = -2

Query: 72  RSYAESTIAPGAVVGVKRISIGRP 1
           +++AE T+ PG  + +K ++ G P
Sbjct: 398 QAFAEETLQPGPSMFLKCVASGNP 421


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 198 SYRTRNSEAEKKRVFFFFEQF 260
           +Y+T N  AEKK    FF  F
Sbjct: 443 NYKTVNLAAEKKDKNSFFNMF 463


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 21.4 bits (43), Expect = 9.5
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 198 SYRTRNSEAEKKRVFFFFEQF 260
           +Y+T N  AEKK    FF  F
Sbjct: 443 NYKTVNLAAEKKDKNSFFNMF 463


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,369
Number of Sequences: 438
Number of extensions: 3881
Number of successful extensions: 10
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23875740
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)