Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_I21
         (632 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal pro...   196   1e-50
Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical pr...    30   1.6  
U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical pr...    28   6.4  
Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical p...    27   8.4  

>AF002196-4|AAB53979.1|  198|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 19 protein.
          Length = 198

 Score =  196 bits (478), Expect = 1e-50
 Identities = 87/158 (55%), Positives = 115/158 (72%)
 Frame = +3

Query: 54  LRSLKLHHRLAASVMXCGXNQVWLDPNXINELANTNSXQNIRKXIKDGLVIKKPVAVHSR 233
           + +L+L  RLA++V+ CG ++VWLDPN ++E++  NS Q+IR+ + DGL+I+KPV VHSR
Sbjct: 1   MSNLRLQKRLASAVLKCGKHRVWLDPNEVSEISGANSRQSIRRLVNDGLIIRKPVTVHSR 60

Query: 234 ARVRKNTEARRKGRHCGFGKRRGTANARMPQKELWXXXXXXXXXXXXXXXTAKKIDRHLY 413
            R R+  EARRKGRH G+GKRRGTANARMP+K LW                AKK+D+HLY
Sbjct: 61  FRAREYEEARRKGRHTGYGKRRGTANARMPEKTLWIRRMRVLRNLLRRYRDAKKLDKHLY 120

Query: 414 HSLYMKAKGNVFKNKRVLMEYIHRKKAEKARTKMLSDQ 527
           H LY++AKGN FKNK+ L+EYI +KK E  R K L+DQ
Sbjct: 121 HELYLRAKGNNFKNKKNLIEYIFKKKTENKRAKQLADQ 158


>Z49131-3|CAA88976.1| 1211|Caenorhabditis elegans Hypothetical protein
            ZC373.4 protein.
          Length = 1211

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +3

Query: 150  ANTNSXQNIRKXIKDGLVIKKPVAVHSRARVRKNTEARRKGRHCG 284
            ++T+S +N+R  + D   +K  V  H     R ++E R+K R  G
Sbjct: 1055 SDTSSSKNVRILLTDEQSVKSSVRSHPSVSTRDSSEERKKVRFAG 1099


>Z81063-1|CAB02952.1|  376|Caenorhabditis elegans Hypothetical
           protein F15D3.2 protein.
          Length = 376

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 600 PPSWRQYVPRGACVPPL 550
           P SW QY P+G C+ P+
Sbjct: 221 PNSWHQYQPKGTCIQPV 237


>U41033-5|AAA82377.1|  675|Caenorhabditis elegans Hypothetical
           protein K09E3.1 protein.
          Length = 675

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 553 RRHASAARNVLPPRRRNCCRPSLXKT 630
           RRHAS     +PP   NC +P+  +T
Sbjct: 14  RRHASEGGTPIPPTPANCGKPTKKRT 39


>Z77652-12|CAI70406.1|  310|Caenorhabditis elegans Hypothetical
           protein C06B3.14 protein.
          Length = 310

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = -3

Query: 390 WQFCTSGAIFLEPFVFVPIVPSVAYAHWQYLFSYQSHSD-DPFYVPLCFCGHGR 232
           W +C   A+FL    F+P     A  +  Y F Y S  D D   + L F  + R
Sbjct: 126 WLYCLGLAMFLLILFFIPFFGGCADNYSFYDFDYTSECDPDDHPITLMFDEYAR 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,583,130
Number of Sequences: 27780
Number of extensions: 277100
Number of successful extensions: 711
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)