Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_I16
         (679 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    30   0.077
AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase ...    23   6.7  
AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.          23   8.9  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 29.9 bits (64), Expect = 0.077
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 442 ITIDRACRSLTLLLFSTFDVLRLHILSFLNALPGGNG 332
           +   + C  + ++LFST+D + L+   +LN + G NG
Sbjct: 4   VITSKVCALIFIILFSTYDSVVLYPEEYLNIILGPNG 40


>AJ439060-8|CAD27759.1|  808|Anopheles gambiae putative V-ATPase
           protein.
          Length = 808

 Score = 23.4 bits (48), Expect = 6.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 382 LRLHILSFLNALPGGNGYAF 323
           LRLH + F++    G GYAF
Sbjct: 774 LRLHWVEFMSKFYEGLGYAF 793


>AY578801-1|AAT07306.1|  506|Anopheles gambiae dSmad2 protein.
          Length = 506

 Score = 23.0 bits (47), Expect = 8.9
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 78  FCLILLISFNMADRFEQLXRHI 13
           FCL LL + N  +  EQ  RHI
Sbjct: 350 FCLGLLSNVNRNEVVEQTRRHI 371


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 536,557
Number of Sequences: 2352
Number of extensions: 8646
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68159265
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)