Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_I14
         (680 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped prot...    27   0.14 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    26   0.33 
X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       25   0.57 
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    25   0.57 
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    25   0.57 
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    22   5.3  
L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protei...    21   9.3  
AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein ...    21   9.3  

>DQ414246-1|ABD63008.1|  126|Tribolium castaneum odd-skipped
           protein.
          Length = 126

 Score = 27.1 bits (57), Expect = 0.14
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +1

Query: 349 CDECGKLFKNQDEIEYH 399
           CD CGK F+ QD +  H
Sbjct: 110 CDICGKAFRRQDHLRDH 126


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 25.8 bits (54), Expect = 0.33
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 343 LKCDECGKLFKNQDEIEYHAAKTNH 417
           LKC  CG+ F++  E+  H  +T H
Sbjct: 479 LKCMWCGQSFRSLAEMTSHMQQTQH 503


>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 572 IKSGKELQD-AKQRLQEQEMQKLVEQRRMEKIE 667
           +++ KE+ + A++  +EQE  K  +Q + +KIE
Sbjct: 65  LRAVKEINEQARREREEQERHKQQQQEKQQKIE 97


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 572 IKSGKELQD-AKQRLQEQEMQKLVEQRRMEKIE 667
           +++ KE+ + A++  +EQE  K  +Q + +KIE
Sbjct: 216 LRAVKEINEQARREREEQERHKQQQQEKQQKIE 248


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 25.0 bits (52), Expect = 0.57
 Identities = 11/33 (33%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +2

Query: 572 IKSGKELQD-AKQRLQEQEMQKLVEQRRMEKIE 667
           +++ KE+ + A++  +EQE  K  +Q + +KIE
Sbjct: 275 LRAVKEINEQARREREEQERHKQQQQEKQQKIE 307


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 358 CGKLFKNQDEIEYH 399
           CGK F   DE++ H
Sbjct: 352 CGKRFTRSDELQRH 365


>L01616-1|AAA30096.1|   74|Tribolium castaneum zinc finger protein
           protein.
          Length = 74

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 337 KSLKCDECGKLFKNQDEIEYH 399
           K  +C EC K F     ++ H
Sbjct: 8   KPFECQECHKRFTRDHHLKTH 28


>AF236856-1|AAG17563.2|  370|Tribolium castaneum Kruppel protein
           protein.
          Length = 370

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/21 (33%), Positives = 10/21 (47%)
 Frame = +1

Query: 337 KSLKCDECGKLFKNQDEIEYH 399
           K  +C EC K F     ++ H
Sbjct: 161 KPFECQECHKRFTRDHHLKTH 181


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,756
Number of Sequences: 336
Number of extensions: 1894
Number of successful extensions: 11
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)