Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_I14
         (680 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0351 + 18030656-18030823,18030963-18031113,18031214-180313...    36   0.039
08_02_1332 + 26207164-26207257,26207454-26207530,26207771-262078...    32   0.37 
01_01_0543 + 3985771-3985866,3985965-3986145,3986668-3986780,398...    32   0.37 
12_01_0079 + 644754-645932,645966-646061,646193-647122                 31   0.64 
11_01_0078 + 609005-610183,610217-610312,610444-611373                 31   0.64 
09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,397...    31   1.1  
09_01_0116 - 1797740-1797788,1798087-1798166,1798245-1798424,179...    29   4.5  
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277...    29   4.5  
04_01_0083 + 904473-905167,905247-905347,905902-905994,907322-90...    28   7.9  

>02_03_0351 +
           18030656-18030823,18030963-18031113,18031214-18031309,
           18032027-18032103,18032627-18032706,18033216-18033276,
           18034153-18034220,18034312-18034393,18034552-18034638,
           18035009-18035086,18035336-18035455,18035554-18035730
          Length = 414

 Score = 35.5 bits (78), Expect = 0.039
 Identities = 15/36 (41%), Positives = 27/36 (75%)
 Frame = +2

Query: 572 IKSGKELQDAKQRLQEQEMQKLVEQRRMEKIEDXKA 679
           I+ GKEL +AK+  ++ E ++++E RR+EK E+ +A
Sbjct: 214 IRIGKELLEAKRIEEDNERKRMIELRRLEKEEEKRA 249



 Score = 33.5 bits (73), Expect = 0.16
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +1

Query: 340 SLKCDECGKLFKNQDEIEYHAAKTNH 417
           SL+C +CG L ++ +E + HA  TNH
Sbjct: 5   SLRCGDCGVLLRSVEEAQAHAEATNH 30



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +1

Query: 340 SLKCDECGKLFKNQDEIEYHAAKTNH 417
           +L C  CGK  ++Q E++ H  +T H
Sbjct: 42  NLVCAACGKPCRSQTEVDLHTKRTGH 67



 Score = 28.7 bits (61), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 124 LGFPKARAXKALAVXNYKGVXPAMEWLLAHAED 222
           +GF  ARA +AL       +  A+ WL  H ED
Sbjct: 124 MGFTTARATRALHFSGNSTIEGAINWLSEHQED 156


>08_02_1332 +
           26207164-26207257,26207454-26207530,26207771-26207841,
           26208448-26208502,26209066-26209187,26209272-26209353,
           26210070-26210160,26210759-26210982,26211294-26211413,
           26211523-26211705
          Length = 372

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 124 LGFPKARAXKALAVXNYKGVXPAMEWLLAHAEDLAVSSEP 243
           +GFP AR+ +AL       +  A+ WLL H  D  +   P
Sbjct: 17  MGFPTARSIRALHFSGNSSLESAINWLLEHENDPDIDQLP 56


>01_01_0543 +
           3985771-3985866,3985965-3986145,3986668-3986780,
           3986854-3987190,3987602-3987603,3987661-3987743,
           3988017-3988116,3988330-3988463,3988711-3988788,
           3989333-3989387,3990159-3990239,3990369-3990567,
           3990609-3990699,3990770-3990892,3991440-3991528,
           3992450-3992539,3992619-3992792,3992911-3993035,
           3993246-3993372,3993826-3993998
          Length = 816

 Score = 32.3 bits (70), Expect = 0.37
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +1

Query: 124 LGFPKARAXKALAVXNYKGVXPAMEWLLAHAEDLAVSSEPS-NSQAGESS 270
           +GF      KA    +  GV  AM WLL+H +D  ++   S +SQA E +
Sbjct: 642 MGFNYLHCQKAAISTSNTGVEEAMNWLLSHMDDPDINDPISKDSQAAEQT 691


>12_01_0079 + 644754-645932,645966-646061,646193-647122
          Length = 734

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +2

Query: 584 KELQDAKQRLQEQEMQKLVEQRRMEKIEDXKA 679
           KE+ + ++R Q +EM KLVE+RR  ++ D KA
Sbjct: 228 KEMLEEEERKQREEMAKLVEERR--RLRDEKA 257


>11_01_0078 + 609005-610183,610217-610312,610444-611373
          Length = 734

 Score = 31.5 bits (68), Expect = 0.64
 Identities = 15/32 (46%), Positives = 23/32 (71%)
 Frame = +2

Query: 584 KELQDAKQRLQEQEMQKLVEQRRMEKIEDXKA 679
           KE+ + ++R Q +EM KLVE+RR  ++ D KA
Sbjct: 228 KEMLEEEERKQREEMAKLVEERR--RLRDEKA 257


>09_02_0077 + 3964729-3964734,3965194-3965289,3965744-3973579,
            3973665-3973982,3974565-3974763,3974937-3975202,
            3975288-3975574,3976714-3977818,3977900-3978046,
            3978146-3978226,3978315-3978540,3978622-3978761,
            3979539-3979645,3979739-3979841
          Length = 3638

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 124  LGFPKARAXKALAVXNYKGVXPAMEWLLAHAED 222
            +GF +ARA +AL       V  A +WL +H E+
Sbjct: 1216 MGFSRARAEEALRSVRTNSVEMATDWLFSHPEE 1248


>09_01_0116 -
           1797740-1797788,1798087-1798166,1798245-1798424,
           1799223-1799324,1801026-1801178,1801804-1801932,
           1802791-1802930,1803941-1804066,1805792-1805963
          Length = 376

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 12/18 (66%), Positives = 15/18 (83%)
 Frame = +2

Query: 89  LNHGSNPAIDRVWVFPKH 142
           L+HGSNPAID++ V P H
Sbjct: 78  LDHGSNPAIDKI-VLPLH 94


>04_04_1144 +
           31222556-31222633,31223238-31227665,31227724-31227789,
           31227790-31228014,31228097-31228255,31228393-31228551,
           31228855-31229013,31229371-31229490,31229604-31229825
          Length = 1871

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 581 GKELQDAKQRLQEQEMQKLVEQRRMEKIEDXK 676
           G EL+ +K+R+QE E +      ++ K+E+ K
Sbjct: 170 GSELESSKERIQEIEAELAASADKLHKLEELK 201


>04_01_0083 +
           904473-905167,905247-905347,905902-905994,907322-907968
          Length = 511

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +1

Query: 349 CDECGKLFKNQDEIEYHAA 405
           C +CG++F   D +E+H A
Sbjct: 243 CSQCGEVFNKADSLEHHQA 261


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,226,855
Number of Sequences: 37544
Number of extensions: 203276
Number of successful extensions: 458
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 458
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1721314888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)