Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_I09
         (539 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0580 + 10884012-10884081,10884173-10884419,10884472-108847...    28   4.1  
04_04_1197 + 31672019-31672325,31672431-31672740,31673334-316783...    27   7.2  
01_04_0102 + 16030094-16030462,16030595-16030714,16031715-160317...    27   7.2  
09_06_0206 - 21580240-21580467,21580544-21580591,21581533-215823...    27   9.6  
04_04_1035 + 30283456-30283536,30284823-30285359,30285508-302865...    27   9.6  
04_04_0408 + 24987218-24987760,24988406-24988534,24988617-249889...    27   9.6  

>09_02_0580 +
           10884012-10884081,10884173-10884419,10884472-10884735,
           10885630-10886093,10888326-10888396
          Length = 371

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = +1

Query: 169 RXFLKQXTNPWKNASEAGYVFDTALQRFLSMKVTQFEYFTVNKRTSL 309
           R    Q    WKN S A  + DT+L   + + V Q     V+  TSL
Sbjct: 203 RWLRMQLDRTWKNLSTASTIKDTSLDYAVPLPVMQTAAEAVSNETSL 249


>04_04_1197 +
           31672019-31672325,31672431-31672740,31673334-31678335,
           31678677-31678715
          Length = 1885

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
 Frame = -3

Query: 318 KSKQTSSL--VYG--KIFKLCYFHGQKPLQCCVENITSLRSVFP 199
           KS++  SL   YG  +  KLCY H   PLQ CV    S  S+FP
Sbjct: 548 KSEEWKSLQQAYGIMQALKLCYDHLSNPLQQCV----SYCSLFP 587


>01_04_0102 +
           16030094-16030462,16030595-16030714,16031715-16031792,
           16032760-16032933,16033844-16033921,16034338-16034510,
           16034757-16034912,16036460-16036621,16036815-16036826,
           16036947-16036962,16037663-16037875
          Length = 516

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 10/16 (62%), Positives = 11/16 (68%)
 Frame = -3

Query: 48  KTRWNGPICRDCSGRP 1
           K RW+G I RDCS  P
Sbjct: 454 KLRWHGSIIRDCSWHP 469


>09_06_0206 -
           21580240-21580467,21580544-21580591,21581533-21582321,
           21582779-21582979
          Length = 421

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = +1

Query: 175 FLKQXTNPWKNASEAGYVFDTALQRFLSMKV 267
           F+ Q    W N S     +DT L RF+++K+
Sbjct: 44  FVAQRKLGWGNFSTVWLAYDTLLNRFVALKI 74


>04_04_1035 + 30283456-30283536,30284823-30285359,30285508-30286512,
            30286718-30287042,30287563-30287818,30287901-30288117,
            30288743-30289095,30289330-30289833,30291267-30292467,
            30292614-30292970,30293258-30293495,30294083-30295125,
            30295234-30296649,30296731-30296855,30297036-30297314,
            30297352-30297382,30298957-30299022,30299447-30299689,
            30299848-30299898,30299980-30300071,30300182-30300249,
            30300515-30300600,30300720-30300824,30300994-30301127,
            30302403-30302436,30302620-30302892,30303019-30303288,
            30303384-30303974,30304065-30304214
          Length = 3376

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 202  KNASEAGYVFDTALQRFLSMKVTQFEYFTVN 294
            ++++E GY    ALQ F+ MK   +E F+ +
Sbjct: 1163 RSSTERGYSKSRALQAFIEMKEVTYEKFSAS 1193


>04_04_0408 +
           24987218-24987760,24988406-24988534,24988617-24988952,
           24990321-24990551
          Length = 412

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 21/73 (28%), Positives = 32/73 (43%)
 Frame = +1

Query: 88  NLAXHSGFSAAXLNLXKTQASRRAEMXRXFLKQXTNPWKNASEAGYVFDTALQRFLSMKV 267
           N    S FSA    +    ASRR E    F +   + +K+A  + Y  +  L+  L    
Sbjct: 266 NSGFGSSFSAPVSPVSSPPASRRLEKELSFARSRHDSFKSADSSQYSIE-ELEMLLEAYF 324

Query: 268 TQFEYFTVNKRTS 306
              +Y T++K TS
Sbjct: 325 VVIDY-TLSKLTS 336


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,729,248
Number of Sequences: 37544
Number of extensions: 173629
Number of successful extensions: 333
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)