Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_I09
         (539 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   3.5  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   3.5  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    21   8.1  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   8.1  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   8.1  

>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 290 TVKYSNCVTFMDRN 249
           T+ YSN VTF  RN
Sbjct: 300 TIMYSNGVTFPQRN 313


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 3.5
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -1

Query: 290 TVKYSNCVTFMDRN 249
           T+ YSN VTF  RN
Sbjct: 300 TIMYSNGVTFPQRN 313


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 8/29 (27%), Positives = 15/29 (51%)
 Frame = -3

Query: 369 FVPYQGTKCKHGYNNNKKSKQTSSLVYGK 283
           ++P  G  CK GY  + + ++ +    GK
Sbjct: 241 YLPSGGCHCKPGYQADVEKQECTECPIGK 269


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 309 VWIFCYCC 332
           VWI CY C
Sbjct: 183 VWILCYFC 190


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 309 VWIFCYCC 332
           VWI CY C
Sbjct: 216 VWIMCYFC 223


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +3

Query: 309 VWIFCYCC 332
           VWI CY C
Sbjct: 269 VWIMCYFC 276


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,211
Number of Sequences: 438
Number of extensions: 1843
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15336375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)