Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_I06
         (743 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical p...   206   1e-53
U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical pr...    62   5e-10
U64854-4|AAB18314.1|  308|Caenorhabditis elegans Hypothetical pr...    30   2.0  
AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical...    29   4.6  
AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinas...    29   4.6  
AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinas...    29   4.6  

>Z11115-12|CAA77452.1|  342|Caenorhabditis elegans Hypothetical
           protein ZK637.5 protein.
          Length = 342

 Score =  206 bits (504), Expect = 1e-53
 Identities = 107/223 (47%), Positives = 140/223 (62%), Gaps = 10/223 (4%)
 Frame = +1

Query: 103 EPLEPSLKNVIDQKSLRWIFXXXXXXXXXXXCSCSLAVQLSKVRESVLIISTDPAHNISD 282
           + LE S+KN+++QK+L+WIF           CSCSLA QLSKVRE VL+ISTDPAHNISD
Sbjct: 3   DQLEASIKNILEQKTLKWIFVGGKGGVGKTTCSCSLAAQLSKVRERVLLISTDPAHNISD 62

Query: 283 AFDQKFSKVPTKVKGFDNLFAMEID--PNVGLTELP--EEYF------EGESEAMRLDKG 432
           AF QKF+K PT V+GF NLFAMEID  PN    E+   EE        EG S    + K 
Sbjct: 63  AFSQKFTKTPTLVEGFKNLFAMEIDSNPNGEGVEMGNIEEMLQNAAQNEGGSGGFSMGKD 122

Query: 433 VMQEIVGAFPGIDEAMSYAEVMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVXRGLGKL 612
            +Q   G  PGIDEAMS+ E++KL+  ++F  VVFDTAPTGHTLRLL FP ++ +   K+
Sbjct: 123 FLQSFAGGLPGIDEAMSFGEMIKLIDSLDFDVVVFDTAPTGHTLRLLQFPTLLEKVFTKI 182

Query: 613 MRLKSKVAPFINQIASLFGLXDFNSDMFSNKMDEMLSVIXQVN 741
           + L+    P +NQ   +FG+   + +    KM   L  + ++N
Sbjct: 183 LSLQGMFGPMMNQFGGMFGMGGGSMNEMIEKMTTTLESVKKMN 225


>U41029-2|AAL65785.1|  192|Caenorhabditis elegans Hypothetical
           protein F47G3.2 protein.
          Length = 192

 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 26/62 (41%), Positives = 39/62 (62%)
 Frame = +1

Query: 493 VMKLVKGMNFSAVVFDTAPTGHTLRLLSFPQVVXRGLGKLMRLKSKVAPFINQIASLFGL 672
           +++L+  + F  VVFDTA TGHTLRLL FP +V     K++ L+  + P +N I  +F +
Sbjct: 1   MIELIDSLGFDVVVFDTASTGHTLRLLQFPTIVDNFFTKILSLQGMLEPMLNNIGGMFEM 60

Query: 673 XD 678
            D
Sbjct: 61  ED 62


>U64854-4|AAB18314.1|  308|Caenorhabditis elegans Hypothetical
           protein K11C4.1 protein.
          Length = 308

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 16/30 (53%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = +2

Query: 152 GGFSLEGKAELGKLRAVAVSQFS-CRKFAN 238
           G F L G+AELG+LR + V  F  CRKF +
Sbjct: 144 GNFCL-GRAELGELRKIFVLDFGLCRKFVD 172


>AC024805-12|AAK39343.1|  557|Caenorhabditis elegans Hypothetical
           protein Y51H7C.12 protein.
          Length = 557

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -1

Query: 299 NFWSNASEILWAGSVDMINTDSR 231
           +FWS   + LW GS D +  +SR
Sbjct: 349 DFWSMHQDTLWTGSFDQLELESR 371


>AC006611-3|AAM15554.1|  798|Caenorhabditis elegans Protein kinase
           protein 32, isoformb protein.
          Length = 798

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 489 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 394
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 630 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 661


>AC006611-2|AAK85457.1|  867|Caenorhabditis elegans Protein kinase
           protein 32, isoforma protein.
          Length = 867

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 489 SIAHSLINTRKSSNNLLHDTLVQSHSLRFSFK 394
           S +HS +   ++SN  LH T   + SLRF  K
Sbjct: 699 STSHSSVENIRTSNGYLHHTPTSTRSLRFEDK 730


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,832,446
Number of Sequences: 27780
Number of extensions: 278067
Number of successful extensions: 647
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 627
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)