Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_I02
(833 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces pom... 128 7e-31
SPAC1851.03 |ckb1||CK2 family regulatory subunit |Schizosaccharo... 29 1.1
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 27 2.5
SPAC1782.03 |||microfibrillar-associated protein family protein|... 27 4.3
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ... 27 4.3
SPAC22E12.01 ||SPAC890.09|triose phosphate transporter |Schizosa... 26 5.7
SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyc... 26 5.7
SPCC569.06 |||S. pombe specific multicopy membrane protein famil... 26 7.6
>SPCC576.04 |||bax inhibitor-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 266
Score = 128 bits (310), Expect = 7e-31
Identities = 73/196 (37%), Positives = 109/196 (55%), Gaps = 1/196 (0%)
Frame = +3
Query: 183 KSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAM 362
KSIR AF+RKVYAIL QL VT F +F H WV +P+ + F + +V L +
Sbjct: 52 KSIRMAFLRKVYAILTAQLFVTSLFGGIFYLHPAFSFWVQMHPWFLILNFFISLVVLFGL 111
Query: 363 ACCPDVRRKAPTNFIFLAIFTAAQSFLLGISASVYEADAVLMAVGITAAVCLGLTLFALQ 542
P P N+IFL +FTA + LG + + + A +L AV IT V + LT F Q
Sbjct: 112 IMKP---YSYPRNYIFLFLFTALEGLTLGTAITFFSARIILEAVFITLGVFVALTAFTFQ 168
Query: 543 TKWDFTMMGGVLLCATIVLLVFGIVAIFVKG-KVITLVYASLGALIFSIYLVYDTXLMMG 719
+KWDF+ +GG L + L++ ++ FV I + +A G L+F Y+++DT ++
Sbjct: 169 SKWDFSRLGGFLYVSLWSLILTPLIFFFVPSTPFIDMAFAGFGTLVFCGYILFDTYNIL- 227
Query: 720 GKHKYSISPEEYIFAA 767
H+Y SPEE+I ++
Sbjct: 228 --HRY--SPEEFIMSS 239
>SPAC1851.03 |ckb1||CK2 family regulatory subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 231
Score = 28.7 bits (61), Expect = 1.1
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Frame = -1
Query: 740 DAVL-VLAPHHQXGVVDEVNGEYESAQGRVHERYDLTFHE-YRHDTEYKEDDGGAEQHAA 567
D +L VL P V DEV G +H RY LT Y+ +YK+ D G
Sbjct: 58 DLILDVLDPDLPEEVQDEVEASARHLYGLIHARYILTAQGLYKMLEKYKKCDFGHCPRVL 117
Query: 566 HHGE--VPLGL 540
+G+ +P+GL
Sbjct: 118 CNGQPMLPVGL 128
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 27.5 bits (58), Expect = 2.5
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = -1
Query: 416 GQEYEVRRSFASHVGTARHRDETDYQHYEGHPEHEGILGHP 294
GQ E +++ SH+ R + + Q + + H G HP
Sbjct: 155 GQGSEPAKAYMSHISNLRKKSRLNLQEIQKNSLHTGNTSHP 195
>SPAC1782.03 |||microfibrillar-associated protein family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 355
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/18 (66%), Positives = 13/18 (72%)
Frame = +2
Query: 305 KSLHVLGGLHSADSLSHR 358
K+LH LGGLHS LS R
Sbjct: 335 KNLHRLGGLHSDSPLSKR 352
>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 305
Score = 26.6 bits (56), Expect = 4.3
Identities = 11/52 (21%), Positives = 21/52 (40%)
Frame = -1
Query: 329 GHPEHEGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESPAYRFFSE 174
G+P+ ++ + E+ ET RH H + + S +Y F +
Sbjct: 122 GYPDDRALMNYHSTVTPQTSERRRETRRHQNNQHSQQYSSQERSSSYNNFED 173
>SPAC22E12.01 ||SPAC890.09|triose phosphate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 374
Score = 26.2 bits (55), Expect = 5.7
Identities = 32/130 (24%), Positives = 56/130 (43%), Gaps = 7/130 (5%)
Frame = +3
Query: 231 CQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLIAMACCPDV-RRKAPTNFI 407
CQ++V MGF L + P ++ F + F +C A+ D+ A I
Sbjct: 91 CQMLVQMGFAKLTILAFPRYQPNKKDNFSWLEYFYRAGIC--ALVTGLDIGLSNASLETI 148
Query: 408 FLAIFTAAQS------FLLGISASVYEADAVLMAVGITAAVCLGLTLFALQTKWDFTMMG 569
L+ +T +S F + + D +L+ IT + G+ L + T+ F + G
Sbjct: 149 TLSFYTMCRSSILIFVFFFSVIFRIEMFDWILLC--ITLVISAGVVLM-VATETQFVLSG 205
Query: 570 GVLLCATIVL 599
+L+ A+ VL
Sbjct: 206 FLLVMASSVL 215
>SPAC17H9.19c |cdt2|sev1|WD repeat protein Cdt2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/94 (19%), Positives = 34/94 (36%)
Frame = -1
Query: 695 DEVNGEYESAQGRVHERYDLTFHEYRHDTEYKEDDGGAEQHAAHHGEVPLGLQSEQSQAQ 516
D N E + + R+H L + + +DD + L ++Q +
Sbjct: 160 DRQNEENQPSARRIHGW--LAHNNAIFSVNFSKDDSLLATSSGDQTSKVFDLSTQQCITR 217
Query: 515 AHGRRYANCHQHRIRFVDACANAEQEALRCREDG 414
R H H ++ V+ C ++ + C DG
Sbjct: 218 LGRRGVDGYHSHSVKQVNFCNDSPYNLVSCSRDG 251
>SPCC569.06 |||S. pombe specific multicopy membrane protein family
1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 478
Score = 25.8 bits (54), Expect = 7.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 378 VRRKAPTNFIFLAIFTAAQSFLLGISASVY 467
+RR + +F ++ T Q+FL+ ++ VY
Sbjct: 310 IRRTSKKMVLFFSLLTCGQAFLVNVAPMVY 339
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,167,771
Number of Sequences: 5004
Number of extensions: 67406
Number of successful extensions: 206
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 410448950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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