Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_I02
(833 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022) 109 3e-24
SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05) 51 1e-06
SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1) 40 0.002
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 36 0.031
SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.38
SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024) 31 1.2
SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.5
SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0) 30 2.0
SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.7
SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23) 30 2.7
SB_20425| Best HMM Match : EGF_CA (HMM E-Value=1.2e-20) 30 2.7
SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.6
SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.1
SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06) 29 6.1
SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27) 28 8.1
SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027) 28 8.1
SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09) 28 8.1
>SB_44648| Best HMM Match : UPF0005 (HMM E-Value=0.00022)
Length = 192
Score = 109 bits (262), Expect = 3e-24
Identities = 55/110 (50%), Positives = 73/110 (66%)
Frame = +3
Query: 438 FLLGISASVYEADAVLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIV 617
FL+ S + +M +T + + + L ++DFTMMGG L A IVL+ FG +
Sbjct: 60 FLIEKSVISFMKCTYVMYAQLTLILKIVIILLFWNFQYDFTMMGGFLFVALIVLICFGFL 119
Query: 618 AIFVKGKVITLVYASLGALIFSIYLVYDTXLMMGGKHKYSISPEEYIFAA 767
AIF +V+ +VYASLGAL+F++YLVYDT +MMGG YSISPEEYIFAA
Sbjct: 120 AIFFHNRVVQIVYASLGALLFALYLVYDTQIMMGGGKMYSISPEEYIFAA 169
>SB_34537| Best HMM Match : UPF0005 (HMM E-Value=6.5e-05)
Length = 179
Score = 50.8 bits (116), Expect = 1e-06
Identities = 36/99 (36%), Positives = 53/99 (53%)
Frame = +3
Query: 177 TEKSIRRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCLI 356
T ++R F+RKVY IL QL +T+ ALF+ K +V P + +VAFI+ LI
Sbjct: 33 TNINVRLGFLRKVYGILSAQLGLTILVSALFMSTPAIKDFVQSRPEVLFVAFILSFGFLI 92
Query: 357 AMACCPDVRRKAPTNFIFLAIFTAAQSFLLGISASVYEA 473
A+ RR++P N L F QS +L ++ +V A
Sbjct: 93 ALMF---KRRESPMNMYLLFGFMFFQSDILELAYAVLGA 128
Score = 46.8 bits (106), Expect = 2e-05
Identities = 24/56 (42%), Positives = 37/56 (66%)
Frame = +3
Query: 600 LVFGIVAIFVKGKVITLVYASLGALIFSIYLVYDTXLMMGGKHKYSISPEEYIFAA 767
L+FG + F + ++ L YA LGAL+FS ++V+DT ++M +SPEEYI A+
Sbjct: 107 LLFGFM--FFQSDILELAYAVLGALLFSAFIVFDTHMLMN-----KMSPEEYILAS 155
>SB_53370| Best HMM Match : GnRH (HMM E-Value=7.1)
Length = 244
Score = 40.3 bits (90), Expect = 0.002
Identities = 36/163 (22%), Positives = 64/163 (39%), Gaps = 11/163 (6%)
Frame = -1
Query: 677 YESAQGRVHERYDLTFHEY-----RHDTEYKEDDGG-AEQHAAHHGEVPLGLQSEQSQAQ 516
YE G H + +T+ E +H Y+E+ G +QH + E Q + +
Sbjct: 85 YEEEHG-THRQQHVTYEEEHGTHRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQQHVTHKE 143
Query: 515 AHGRRYANCHQHRIRFVDACANAEQEALRCRED-GQEYEVRRSFASHVGTARHRDETDYQ 339
HG QH + + + Q+ + E+ G + ++ GT R + T +
Sbjct: 144 EHGTH----RQHHVTYEEEHGTHRQQHVTYEEEHGTHRQHHVTYEEEHGTHRQQHVTYEE 199
Query: 338 HYEGHPEHEGILGHPDFG----RSVVQEQSDETHRHHQLTHQD 222
+ H +H + G V E+ THR H +TH++
Sbjct: 200 EHGTHRQHH-VTYEEKHGTHRQHHVTYEEEHGTHRQHHVTHKE 241
Score = 34.7 bits (76), Expect = 0.094
Identities = 28/141 (19%), Positives = 55/141 (39%), Gaps = 5/141 (3%)
Frame = -1
Query: 629 HEYRHDTEYKEDDGGAEQHAAHHGEVPLGLQSEQSQAQAHGRRYANCHQHRIRFVDACAN 450
H +H T +E +QH ++ E Q + + HG Q + + +
Sbjct: 50 HRQQHVTYEEEHGTHRQQHVSYEEEHGTHRQQHVTYEEEHGTH----RQQHVTYEEEHGT 105
Query: 449 AEQEALRCRED-GQEYEVRRSFASHVGTARHRDETDYQHYEGHPEHEGILGHPDFG---- 285
Q + E+ G + ++ GT R + T + + H +H + + G
Sbjct: 106 HRQHHVTYEEEHGTHRQQHVTYEEEHGTHRQQHVTHKEEHGTHRQHH-VTYEEEHGTHRQ 164
Query: 284 RSVVQEQSDETHRHHQLTHQD 222
+ V E+ THR H +T+++
Sbjct: 165 QHVTYEEEHGTHRQHHVTYEE 185
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 36.3 bits (80), Expect = 0.031
Identities = 41/147 (27%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
Frame = -1
Query: 602 KEDDGGAEQHAAHHGEVPLGLQSEQSQAQAHGRRYANCHQHRIRFVDACAN-AEQEALRC 426
K+ D ++Q ++ H E L LQ+ Q Q + ++ + VD AEQ A +
Sbjct: 4529 KQLDNKSDQLSSLHDERELSLQNLQEQLKQKEFELSSLKEE----VDTTKQFAEQAANQM 4584
Query: 425 REDGQEYEVR-RSFASHVGTARHRDETDYQHYEGHPEHEGILGHPDFGRSVVQEQSDETH 249
E QEYE + R G + ++T +Q E E+E + D V E+ + +
Sbjct: 4585 NEQQQEYEDQLRKMEMLYGELQRSEDTIHQLVE---ENEHLRTVLDSHEDTVSEEGEAS- 4640
Query: 248 RHHQLTHQDRVHLSDESPAYRFFSEIE 168
T + VH DESPA S+ E
Sbjct: 4641 -----TSSEEVHYHDESPAKEEASDEE 4662
>SB_3365| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 335
Score = 32.7 bits (71), Expect = 0.38
Identities = 18/54 (33%), Positives = 24/54 (44%)
Frame = +3
Query: 192 RRAFIRKVYAILMCQLMVTMGFIALFLYHRPTKVWVAQNPFMFWVAFIVLIVCL 353
RR+ +RK Y +L+ L LFL P W F+F A I+CL
Sbjct: 4 RRSMLRKTYNVLILNLACADSLTGLFLLITPRFFWSTYFLFLFGKASNASIMCL 57
>SB_17748| Best HMM Match : DUF1312 (HMM E-Value=0.0024)
Length = 1272
Score = 31.1 bits (67), Expect = 1.2
Identities = 16/50 (32%), Positives = 29/50 (58%)
Frame = +3
Query: 480 VLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVLLVFGIVAIFV 629
++M +GI A+C T T+ D + +GG +L + LL+ I+A+F+
Sbjct: 913 IIMMIGIILAMCGASTFDTPSTRGDLSDLGGKVLMGSAGLLI--ILALFI 960
>SB_42965| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 760
Score = 30.7 bits (66), Expect = 1.5
Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 4/145 (2%)
Frame = -1
Query: 746 GRDAVLVLAPHHQXGVVDEVNGEYESAQGRVHERYDLTFHEYRH-DTEYKEDDGGAEQHA 570
G+ +L+ H+Q G +E G Y+ A + D H G + A
Sbjct: 406 GKANLLIGKTHYQQGKYEEARGHYKEALRLYQKSSDDQGQGKAHLQIGNTHHQQGKYEEA 465
Query: 569 AHHGEVPLGLQSEQSQAQAHGRRY---ANCHQHRIRFVDACANAEQEALRCREDGQEYEV 399
H + L L + S Q G+ + N H + ++ +A +EALR + + +
Sbjct: 466 IGHYKEALRLYQKTSDDQGQGKAHLLIGNTHNQQGKYEEA-RGYYKEALRLYQKTSDVQG 524
Query: 398 RRSFASHVGTARHRDETDYQHYEGH 324
+ +G H + Y+ GH
Sbjct: 525 QGEAHLRIGKT-HYQQGKYEEAIGH 548
Score = 30.7 bits (66), Expect = 1.5
Identities = 28/115 (24%), Positives = 47/115 (40%), Gaps = 4/115 (3%)
Frame = -1
Query: 761 EDVLLGRDAVLVLAPHHQXGVVDEVNGEYESAQGRVHERYDLTFHEYRHD-TEYKEDDGG 585
+D G+ +L+ H Q G +E G Y+ A + D + H D G
Sbjct: 561 DDQWQGKAHILIGNTHDQQGKYEEARGHYKEALRLYQKSSDDQWQGKAHILIGNTHDQQG 620
Query: 584 AEQHAAHHGEVPLGLQSEQSQAQAHGRRY---ANCHQHRIRFVDACANAEQEALR 429
+ A H + L L + S Q G+ + N H + ++ +A + +EALR
Sbjct: 621 KYEEARGHYKEALRLYQKTSDDQGQGKAHLLIGNTHNQQGKYEEARGH-YKEALR 674
>SB_53740| Best HMM Match : Thyroglobulin_1 (HMM E-Value=0)
Length = 1980
Score = 30.3 bits (65), Expect = 2.0
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = -1
Query: 506 RRYANCHQHRIRFVDACANAEQEALRCREDGQEYEVR 396
+R +CHQH +R + A N C+ DG+ EV+
Sbjct: 494 QRLTSCHQHIMRALQAPRNQRGHVPICKSDGRYEEVQ 530
>SB_47098| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 580
Score = 29.9 bits (64), Expect = 2.7
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +3
Query: 534 ALQTKWDFTMMGGVLLCATIVLLV-FGIVA-IFVKGKVITLVYASLG 668
AL K + ++ + C T+ + +G +A + V G+VI ++YA LG
Sbjct: 227 ALSAKPQWNILNSIYFCMTVTTTIGYGSLAPVTVPGRVICVIYALLG 273
>SB_53809| Best HMM Match : F5_F8_type_C (HMM E-Value=1.6e-23)
Length = 486
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -1
Query: 725 LAPHHQXGVVDEVNGEYESAQGRVHERYDLTFHEYRHDTEYKEDDGGA 582
+ P H+ + NG Y ++GR+H Y + +EY + D GA
Sbjct: 350 MIPDHRFSATSQYNGNYPPSRGRLHSIYSWE-PRAKSSSEYLQVDLGA 396
>SB_20425| Best HMM Match : EGF_CA (HMM E-Value=1.2e-20)
Length = 144
Score = 29.9 bits (64), Expect = 2.7
Identities = 13/43 (30%), Positives = 18/43 (41%)
Frame = -1
Query: 410 EYEVRRSFASHVGTARHRDETDYQHYEGHPEHEGILGHPDFGR 282
+Y + H+ AR+ D Y GHP+ GH D R
Sbjct: 92 KYSDDACYRGHLDDARYHGHLDNARYHGHPDDAHYRGHLDNAR 134
>SB_56406| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 481
Score = 29.5 bits (63), Expect = 3.5
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 6/68 (8%)
Frame = -1
Query: 566 HHGEVPLGLQSEQSQAQAHGRRY-ANCHQ-----HRIRFVDACANAEQEALRCREDGQEY 405
H P ++ QS+ Q R Y A CH+ H R +CA + E R+D +
Sbjct: 177 HARPTPQRMRPMQSETQHRHRAYGAECHKCGKRNHYARMCRSCAKTKDETTSERQDQRGK 236
Query: 404 EVRRSFAS 381
R+F S
Sbjct: 237 HQSRNFGS 244
>SB_57096| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 29.1 bits (62), Expect = 4.6
Identities = 20/54 (37%), Positives = 26/54 (48%)
Frame = +2
Query: 8 LQEERIPRXGAYPQGRICAPSAWLPTCIWRRRLR*TGLYPTERLSRRRWRSQGF 169
L R+P G P GR+ PS WLP+ R +G P+ RL R S+ F
Sbjct: 340 LPSGRLP-SGRLPSGRL--PSGWLPSRRLPSRRLPSGRLPSRRLPSGRLPSRRF 390
>SB_55155| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 487
Score = 29.1 bits (62), Expect = 4.6
Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +3
Query: 555 FTMMGGVLLCATIVLLVFGIVAIFVKGKVITLVYAS-LGALIFSIYLVYDTXLMMGGKHK 731
FT++G VL+CA+ L F + V++L A L AL+ + +Y + GGK K
Sbjct: 5 FTLIGNVLVCASFAL--FRELRTICNYFVVSLSAADILVALLAMPFCLYRSSCSKGGKGK 62
Query: 732 YS 737
S
Sbjct: 63 LS 64
>SB_51083| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1232
Score = 29.1 bits (62), Expect = 4.6
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = -1
Query: 659 RVHERYDLTFHEYRHDTEYKEDDGGAEQHAAHHGEVPLG 543
R H+ L ++ E++E DG QHA + GEV LG
Sbjct: 667 RGHDVQSLKALQWLKYVEHREGDGVFIQHAGNRGEVRLG 705
>SB_58660| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 960
Score = 29.1 bits (62), Expect = 4.6
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 2/105 (1%)
Frame = -1
Query: 626 EYRHDTEYKEDDGGAEQ-HAAHHGEVPLGLQSEQSQAQAHGRRYANCHQHRIRFVDACAN 450
E H+ E EDD E A H+ EVP+G + + R + R + N
Sbjct: 194 EVVHNREGPEDDRSREDAEAVHNREVPVGARGREDAEVVLNREVPVGARSR-EDAEVVLN 252
Query: 449 AE-QEALRCREDGQEYEVRRSFASHVGTARHRDETDYQHYEGHPE 318
E E R RED EV + G AR R++ + H PE
Sbjct: 253 REGPEGARSREDA---EVVLNREGPEG-ARSREDAEVLHNREGPE 293
>SB_2438| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1086
Score = 28.7 bits (61), Expect = 6.1
Identities = 20/89 (22%), Positives = 37/89 (41%)
Frame = +3
Query: 336 VLIVCLIAMACCPDVRRKAPTNFIFLAIFTAAQSFLLGISASVYEADAVLMAVGITAAVC 515
+++VCL A V + NF+ + T A+ S S+ + + +T
Sbjct: 158 IMLVCLAAAFRVTKVAARQTRNFVVFYLLTRARHLKNCTSFSILNLCVADLLITVTCIPL 217
Query: 516 LGLTLFALQTKWDFTMMGGVLLCATIVLL 602
L + L+ + +W F G +C T+ L
Sbjct: 218 LTVDLY-IADEWLF----GAFMCKTVTFL 241
>SB_39021| Best HMM Match : M (HMM E-Value=5.3e-06)
Length = 1691
Score = 28.7 bits (61), Expect = 6.1
Identities = 14/52 (26%), Positives = 25/52 (48%)
Frame = -1
Query: 314 EGILGHPDFGRSVVQEQSDETHRHHQLTHQDRVHLSDESPAYRFFSEIETLD 159
E +L + R+ +Q ++ R L+H D+V + + P E+ TLD
Sbjct: 1568 EELLYEAESSRNEIQVLRNKIERLEHLSHDDQVRIVTQGPEQSLACELGTLD 1619
>SB_46154| Best HMM Match : zf-C2H2 (HMM E-Value=7.9e-27)
Length = 799
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 194 AYRFFSEIETLDFAIFAD*VVRWDIARFTVTC 99
+YRF S I T + D +V+W+++ F ++C
Sbjct: 113 SYRFVSTISTTGHSSI-DSIVQWNVSEFVISC 143
>SB_43551| Best HMM Match : Plasmodium_HRP (HMM E-Value=0.027)
Length = 466
Score = 28.3 bits (60), Expect = 8.1
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = -1
Query: 386 ASHVGTARHRDETDYQHYEGHPEHEGILGHPDFGRSV 276
ASH G R++ + + GH E GH GR +
Sbjct: 270 ASHTGHIRNKSYVEQASHTGHAEQASHTGHMQNGRHI 306
>SB_5120| Best HMM Match : Pigment_DH (HMM E-Value=6e-09)
Length = 820
Score = 28.3 bits (60), Expect = 8.1
Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +3
Query: 441 LLGISASVYEA---DAVLMAVGITAAVCLGLTLFALQTKWDFTMMGGVLLCATIVL 599
LLG++ V + D +L+ + + LF + D MM GVLLC T V+
Sbjct: 365 LLGVTDVVDDVMMDDVLLVVTDVVGDTMIDDVLFGVTDVVDDAMMDGVLLCVTNVV 420
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,844,395
Number of Sequences: 59808
Number of extensions: 595268
Number of successful extensions: 2149
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2081
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2347493764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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