Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H24
         (750 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    26   0.37 
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    24   1.5  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.4  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    21   8.0  

>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = -1

Query: 213 VLGGDWRKMITMRKVHLGPLTSDS 142
           VL GDW+K   +R    GP T  +
Sbjct: 169 VLDGDWKKCFNIRLKRAGPRTESA 192


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 571 LKLFMQT*FTASWTRNVNVWKW 636
           +K+F +    A W+ N  +W W
Sbjct: 391 MKVFEELLLDADWSVNAGMWMW 412


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = +3

Query: 633 VDVALGRDARLEDAASIADVLADWCNACEAVLN 731
           VDV+  R   LED     D    W N   A L+
Sbjct: 456 VDVSTKRRTELEDLTPTFDFTNGWANGTLAKLS 488


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 13/37 (35%), Positives = 15/37 (40%)
 Frame = -1

Query: 252 TQNL*LPLLKGQIVLGGDWRKMITMRKVHLGPLTSDS 142
           T  L L LLK    L G WR           P+T D+
Sbjct: 7   TYLLFLALLKNISALNGAWRWECKSNYCQKAPITPDT 43


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,952
Number of Sequences: 336
Number of extensions: 3461
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20027417
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)