Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H24
         (750 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1751.03 ||SPAC31A2.01|translation initiation factor eIF3m|Sc...    49   6e-07
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    31   0.23 
SPAC25G10.08 |||translation initiation factor eIF3b |Schizosacch...    29   0.94 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    29   0.94 
SPAC1B3.02c |||transcription elongation factor, Elf1 family|Schi...    27   3.8  
SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1 |Schizosa...    27   3.8  
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy...    27   3.8  
SPAC27F1.04c |nuf2||spindle pole body protein Nuf2|Schizosacchar...    26   6.6  
SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyc...    26   6.6  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   8.7  
SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase Pp...    25   8.7  

>SPAC1751.03 ||SPAC31A2.01|translation initiation factor
           eIF3m|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 402

 Score = 49.2 bits (112), Expect = 6e-07
 Identities = 43/188 (22%), Positives = 90/188 (47%), Gaps = 9/188 (4%)
 Frame = +3

Query: 207 LEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFA 386
           L + V +       A  EL+++ + +P    F +++ +P +++LE       L+ L + +
Sbjct: 196 LLEAVKMDNSTADEAVRELVQRAVNSPKYFFFDDIVTLPPVQQLEQST----LQLLGILS 251

Query: 387 YGTYKDYI----ENKSDYLELTTVQ---CKKLQHLTIATLATQ--EKCIPYSVLLEELDI 539
            G   DY+    EN +        +    +K++ LTIA+LATQ     + Y  + + L I
Sbjct: 252 GGMTDDYVSWVAENHAHCQHQKFDEDAIARKMKLLTIASLATQAPNNTLSYGDVAKSLKI 311

Query: 540 KNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLEDAASIADVLADWCNACE 719
            +  ++E  II+ I A ++ G++ Q  K + +  +  R     +  ++ + LA W ++  
Sbjct: 312 -DENEVELWIIDVIRAGLVEGRMSQLTKTLSIHRSSYRVFGKHEWVALHEKLAKWGSSLR 370

Query: 720 AVLNSVDQ 743
            +L  ++Q
Sbjct: 371 YMLQVMEQ 378


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 30.7 bits (66), Expect = 0.23
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 711 HCTSRPGHQQWKLHLQAAHLCQGPRPLPH 625
           H  ++P H+ WK H +  H  + PRP+PH
Sbjct: 271 HNGTKPDHKPWK-HEEHCHHGKFPRPIPH 298


>SPAC25G10.08 |||translation initiation factor eIF3b
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 725

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
 Frame = +3

Query: 306 ELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATL 485
           E+   P    L S P  + ++T NLF     K Y ++  DYL +   +  K +  T + L
Sbjct: 379 EITNQPARVALISIPSKSTIRTKNLFNVSDCKLYWQSNGDYLCVKVDRHTKTKKSTFSNL 438

Query: 486 ---ATQEKCIPYSVLLEELDIKNV 548
                +EK IP    +E +D+K+V
Sbjct: 439 EIFRIREKNIP----VEVVDLKDV 458


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
 Frame = +3

Query: 351 YATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCI-PYSVLLE 527
           YA    +        YK Y+E +SDY EL     K+L   + +     + CI   S L+ 
Sbjct: 161 YAKSAHSTKTVVDALYKSYLEKQSDYSELLDNYKKQLNKASESCKGNYQACIESRSTLIT 220

Query: 528 ELD 536
            L+
Sbjct: 221 SLE 223


>SPAC1B3.02c |||transcription elongation factor, Elf1
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 107

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +3

Query: 687 DVLADWCNACEAVLNSVDQ 743
           DV +DW +AC+AV N   +
Sbjct: 68  DVYSDWIDACDAVANQAKE 86


>SPBC651.01c |nog1|SPBC725.18c|GTP binding protein Nog1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 22/61 (36%), Positives = 29/61 (47%)
 Frame = +3

Query: 492 QEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLED 671
           Q+    Y  + E LD KNV D  D  IEA         LD+E +R+E +     D  +ED
Sbjct: 423 QDPSWKYDRMPELLDGKNVADFVDPEIEAKLL-----ALDEEEERLEREGYYDSDQEIED 477

Query: 672 A 674
           A
Sbjct: 478 A 478


>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 299

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 3/37 (8%)
 Frame = +3

Query: 435 LTTVQCKKLQHLTIATLATQEKCIP---YSVLLEELD 536
           + ++ CK+LQ L   +   Q KCI    Y V+L++++
Sbjct: 1   MPSIDCKRLQKLAPKSPENQSKCISRLRYMVMLDQVE 37


>SPAC27F1.04c |nuf2||spindle pole body protein
           Nuf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 441

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +3

Query: 429 LELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDL 566
           LE   V+  KL+H T+     QE C    +  ++L+ +  + L+ L
Sbjct: 295 LEECLVELDKLEHATVLLSTNQELCDQIEINKKKLEFRKEQLLKQL 340


>SPAC7D4.07c |trx1||cytosolic thioredoxin Trx1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 103

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +3

Query: 666 EDAASIADVLADWCNACEAVLNSVDQ 743
           +D   + D  A WC  C+A+    +Q
Sbjct: 17  QDKLVVVDFFATWCGPCKAIAPKFEQ 42


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/27 (40%), Positives = 19/27 (70%)
 Frame = -2

Query: 413 LNVVLICAIGKQIKSF*MSCIRSTLQL 333
           LN+ + C I + I+SF +S +RST ++
Sbjct: 491 LNLNVCCCIAEPIQSFILSFLRSTYKV 517


>SPCC1919.01 |ppk34|SPCC830.12|serine/threonine protein kinase
           Ppk34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 354

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 483 LATQEKCIPYSVLLEELDIKNVRDLEDLI 569
           +  QEK  PY  + +ELD+  V D E+++
Sbjct: 106 IRNQEKKDPYYYIRKELDVLKVLDHENVV 134


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,916,477
Number of Sequences: 5004
Number of extensions: 56512
Number of successful extensions: 165
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)