Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H24
         (750 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcript...    26   1.4  
DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific do...    25   1.9  
DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific doub...    25   1.9  
AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific do...    25   3.3  
AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific doub...    25   3.3  
AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.4  
AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic acetylch...    24   4.4  
DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2 pro...    24   5.8  
AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein...    23   7.6  

>AB090823-2|BAC57922.1| 1154|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1154

 Score = 25.8 bits (54), Expect = 1.4
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
 Frame = -1

Query: 480  LQWSDAVISCTGLWLILN-SPICSQCSPYMCHRQTN*EFLNELHKVHSPAL*YLASLIAR 304
            ++W+  VI   G W + N   +    S  +       E+LN++    SPA      ++  
Sbjct: 906  VRWAHLVIPDVGAWQLRNHGEVTFHLSQVLSGHGFLREYLNKMRFTSSPACPRCPGVVEG 965

Query: 303  RKHALLEPP 277
             +H + E P
Sbjct: 966  VEHVMFECP 974


>DQ137802-1|AAZ78363.1|  265|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 265

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 720 LHKHCTSRPGHQQWKLHLQAAHLCQGPRPL 631
           +H+     P H     HL A H C  P P+
Sbjct: 157 IHRRSPGVPHHVAEPQHLGATHSCVSPEPV 186


>DQ137801-1|AAZ78362.1|  622|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 622

 Score = 25.4 bits (53), Expect = 1.9
 Identities = 10/30 (33%), Positives = 13/30 (43%)
 Frame = -1

Query: 720 LHKHCTSRPGHQQWKLHLQAAHLCQGPRPL 631
           +H+     P H     HL A H C  P P+
Sbjct: 157 IHRRSPGVPHHVAEPQHLGATHSCVSPEPV 186


>AY903308-1|AAX48940.1|  241|Anopheles gambiae female-specific
           doublesex protein protein.
          Length = 241

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 720 LHKHCTSRPGHQQWKLHLQAAHLCQGPRPL 631
           +H+     P H     H+ A H C  P P+
Sbjct: 133 IHRRSPGVPHHVPEPQHMGATHSCVSPEPV 162


>AY903307-1|AAX48939.1|  283|Anopheles gambiae male-specific
           doublesex protein protein.
          Length = 283

 Score = 24.6 bits (51), Expect = 3.3
 Identities = 9/30 (30%), Positives = 13/30 (43%)
 Frame = -1

Query: 720 LHKHCTSRPGHQQWKLHLQAAHLCQGPRPL 631
           +H+     P H     H+ A H C  P P+
Sbjct: 133 IHRRSPGVPHHVPEPQHMGATHSCVSPEPV 162


>AY705401-1|AAU12510.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 327 IKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLEL 437
           IK+   GP+   L    L  Y T +  + N+SD LE+
Sbjct: 15  IKDSLQGPHEKRLLNNLLATYNTLERPVANESDPLEV 51


>AY705400-1|AAU12509.1|  490|Anopheles gambiae nicotinic
           acetylcholine receptor subunitalpha 6 protein.
          Length = 490

 Score = 24.2 bits (50), Expect = 4.4
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 327 IKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLEL 437
           IK+   GP+   L    L  Y T +  + N+SD LE+
Sbjct: 15  IKDSLQGPHEKRLLNNLLATYNTLERPVANESDPLEV 51


>DQ219483-1|ABB29887.1|  961|Anopheles gambiae cryptochrome 2
           protein.
          Length = 961

 Score = 23.8 bits (49), Expect = 5.8
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = +1

Query: 571 LKLFMQT*FTASWTRNVNVWKW 636
           +K+F +    A W+ N  +W W
Sbjct: 378 MKVFEELLLDADWSVNAGMWMW 399


>AJ439353-6|CAD27928.1|  695|Anopheles gambiae putative G-protein
           coupled receptor protein.
          Length = 695

 Score = 23.4 bits (48), Expect = 7.6
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 200 SPPRTICPFSKGS 238
           SP  T+CP SKG+
Sbjct: 617 SPNATVCPMSKGA 629


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 773,124
Number of Sequences: 2352
Number of extensions: 15887
Number of successful extensions: 29
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 77339358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)