Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H23
         (752 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc...    30   0.41 
SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces...    28   1.2  
SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex s...    26   5.0  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.6  

>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1016

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = -3

Query: 594 FEGSGCGFGTGSVMGLVQQIS---TLSWQSSSPNLTSSTPHPVTLALLTST-PSLF 439
           F  SG    T  ++  + Q+S   T SW SSS  LT +    VT A+ T+  P +F
Sbjct: 151 FGASGITSNTDPIVDEIDQMSARFTFSWDSSSMQLTLTEGMAVTTAVYTNAIPQIF 206


>SPAC1093.04c |||tRNA nucleotidyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 500

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 16  MSRQRVSVKVXRATKHFNKNKKIKL 90
           +SR+R+ V+V +  KH N N+ +K+
Sbjct: 228 ISRERIGVEVDKMLKHCNTNRALKI 252


>SPAC13G6.04 |tim8||TIM22 inner membrane protein import complex
           subunit Tim8|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 98

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 11/45 (24%), Positives = 24/45 (53%)
 Frame = +3

Query: 96  FLRNQTKKVIMC*LVHSFRNTVT*NFVGSLSQSVLIKEVQCVRFC 230
           F+ ++ +KV +   +H F +T     +G++   +   E QC++ C
Sbjct: 23  FIESEQQKVKLQQAIHQFTSTCWPKCIGNIGNKLDKSEEQCLQNC 67


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 548 NPITEPVPKPQPDPSKLKGCG 610
           NPI  PVP+P+ D ++ K CG
Sbjct: 579 NPI--PVPRPRVDLTQCKSCG 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,862,586
Number of Sequences: 5004
Number of extensions: 57766
Number of successful extensions: 261
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)