Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_H23
(752 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_04_0017 + 12297539-12297697,12298191-12298229,12298457-122988... 32 0.43
12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136 31 1.3
03_04_0175 - 18092055-18092583,18092819-18093378 29 3.0
01_02_0007 + 10132380-10133201 25 3.8
12_02_0279 - 16704284-16704925 29 4.0
12_02_0043 + 12762257-12762678,12762751-12762778 29 4.0
07_03_0557 + 19447367-19447517,19447630-19447730,19448359-194484... 29 5.2
02_04_0054 + 19279579-19280772 29 5.2
09_04_0730 + 19783346-19783372,19783548-19783638,19783973-197840... 28 6.9
02_04_0021 + 18975992-18976408 24 9.0
05_04_0322 + 20239793-20240127,20240176-20240728,20241317-202414... 28 9.2
>11_04_0017 +
12297539-12297697,12298191-12298229,12298457-12298825,
12298921-12299058
Length = 234
Score = 32.3 bits (70), Expect = 0.43
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -2
Query: 343 QVPCAGLRRRGGRSEDVQKQGRV*GRVLGETDCYQHRQQKR 221
+VP A ++ GGR D + GR+ G G C RQ K+
Sbjct: 2 EVPAASVKGGGGRRSDEEAPGRIAGNGAGNVACLFTRQGKK 42
>12_01_0889 - 8567209-8567490,8567539-8568009,8568116-8568136
Length = 257
Score = 30.7 bits (66), Expect = 1.3
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 494 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 592
D+RF ++D E++E P+++P +P+P PS
Sbjct: 166 DLRFIQKDSGETLEFHSKEPLSQPPIEPEPCPS 198
>03_04_0175 - 18092055-18092583,18092819-18093378
Length = 362
Score = 29.5 bits (63), Expect = 3.0
Identities = 12/33 (36%), Positives = 22/33 (66%)
Frame = +2
Query: 494 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 592
D+RF ++D E++E+ P ++P +P+P PS
Sbjct: 226 DLRFIQKDSGETLELHSKEPPSQPPIEPEPCPS 258
>01_02_0007 + 10132380-10133201
Length = 273
Score = 25.4 bits (53), Expect(2) = 3.8
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +2
Query: 548 NPITEPVPKPQPDP 589
NP +P+P+PQP P
Sbjct: 67 NPQPQPLPQPQPQP 80
Score = 22.2 bits (45), Expect(2) = 3.8
Identities = 8/14 (57%), Positives = 9/14 (64%)
Frame = +2
Query: 563 PVPKPQPDPSKLKG 604
P P+PQP P L G
Sbjct: 88 PQPQPQPQPLPLPG 101
>12_02_0279 - 16704284-16704925
Length = 213
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/32 (37%), Positives = 20/32 (62%)
Frame = +2
Query: 509 EEDCQESVEICCTNPITEPVPKPQPDPSKLKG 604
+ED E++E+ P ++P KP+P PS +G
Sbjct: 72 KEDSGETLELLSREPASQPPIKPKPCPSGSQG 103
>12_02_0043 + 12762257-12762678,12762751-12762778
Length = 149
Score = 29.1 bits (62), Expect = 4.0
Identities = 12/33 (36%), Positives = 21/33 (63%)
Frame = +2
Query: 494 DVRFGEEDCQESVEICCTNPITEPVPKPQPDPS 592
D+ F +ED E++E+ P ++P +P+P PS
Sbjct: 17 DLHFIQEDSGETLELHSKEPPSQPPIEPEPCPS 49
>07_03_0557 +
19447367-19447517,19447630-19447730,19448359-19448480,
19448725-19448912,19449000-19449178,19449370-19449711,
19449795-19449859,19450259-19450317,19450486-19450573,
19450653-19450722,19450759-19450992,19451072-19451411,
19451643-19451691,19452690-19452780,19453077-19453442
Length = 814
Score = 28.7 bits (61), Expect = 5.2
Identities = 8/9 (88%), Positives = 8/9 (88%)
Frame = +3
Query: 684 PGWWLCWTL 710
PGWWLCW L
Sbjct: 689 PGWWLCWWL 697
>02_04_0054 + 19279579-19280772
Length = 397
Score = 28.7 bits (61), Expect = 5.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = -2
Query: 478 RHAGVINVHPFIVLVTQIVGDAFARFPVLIRKHAVALRRLNDDVFQVPCAGL--RRRGGR 305
RH G+ + + T ++ +A+ +L+ KHA L + ++ V A L RRR R
Sbjct: 316 RHPGIFYLSRVLGTQTVVLREAYGGGSLLLAKHAHPLATIREEYSAVMRAALPPRRRRSR 375
Query: 304 SED 296
D
Sbjct: 376 ESD 378
>09_04_0730 +
19783346-19783372,19783548-19783638,19783973-19784051,
19784410-19784743,19784934-19785968,19786141-19786290,
19786781-19787215
Length = 716
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/52 (34%), Positives = 27/52 (51%)
Frame = -2
Query: 394 LIRKHAVALRRLNDDVFQVPCAGLRRRGGRSEDVQKQGRV*GRVLGETDCYQ 239
L + + L R D VF+ PCA L+R +E V K G G V+ + + +Q
Sbjct: 637 LSKTGTMRLLRSGDVVFEGPCASLKREKQDAETVDK-GNDCGLVIQDCNDFQ 687
>02_04_0021 + 18975992-18976408
Length = 138
Score = 24.2 bits (50), Expect(2) = 9.0
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +2
Query: 518 CQESVEICCTN-PITEPVPKPQPDP 589
C ++ +C +T P PKP+P P
Sbjct: 82 CNQNSIVCMVRCALTPPPPKPKPTP 106
Score = 22.2 bits (45), Expect(2) = 9.0
Identities = 8/16 (50%), Positives = 8/16 (50%)
Frame = +2
Query: 563 PVPKPQPDPSKLKGCG 610
P P P P P K G G
Sbjct: 116 PAPSPSPPPPKAAGHG 131
>05_04_0322 +
20239793-20240127,20240176-20240728,20241317-20241425,
20244456-20244723,20244943-20245197,20245594-20246539
Length = 821
Score = 27.9 bits (59), Expect = 9.2
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Frame = -3
Query: 597 NFEGSGCGFGTGSVMGLVQQISTLSWQSSSPNLTSS---TPHPVTLALLTSTPSLFL 436
N + S + L+ Q ++ W S+ PN+TSS + T+A+L +T +L L
Sbjct: 366 NLDESQLAISQDGTLVLLNQSRSVVWSSNVPNVTSSNVDSSEAKTVAVLLNTGNLAL 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,867,491
Number of Sequences: 37544
Number of extensions: 441458
Number of successful extensions: 1881
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1859
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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