Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H23
         (752 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.3  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.3  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.8  
AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.3  
AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   5.4  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   5.4  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   5.4  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    22   7.1  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -2

Query: 487 SPPRHAGVINVHPFIVLVTQ---IVGDAFARFPVLIRKHAVALRRLNDDVFQVPCAGLRR 317
           S P   G+ N   ++VL T+    +     +   ++ +H +     N D+F+V CA    
Sbjct: 372 SKPYRFGIQN-GDYVVLETEWSSFINPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 430

Query: 316 R-GGRSEDVQKQGRV 275
           +    SE+V K+ ++
Sbjct: 431 QLTNISEEVLKEAKI 445


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 18/75 (24%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
 Frame = -2

Query: 487 SPPRHAGVINVHPFIVLVTQ---IVGDAFARFPVLIRKHAVALRRLNDDVFQVPCAGLRR 317
           S P   G+ N   ++VL T+    +     +   ++ +H +     N D+F+V CA    
Sbjct: 78  SKPYRFGIQN-GDYVVLETEWSSFINPWTKKLEFVVGQHRILKGPANPDIFRVSCATEHS 136

Query: 316 R-GGRSEDVQKQGRV 275
           +    SE+V K+ ++
Sbjct: 137 QLTNISEEVLKEAKI 151


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 11/33 (33%), Positives = 15/33 (45%)
 Frame = +1

Query: 247 SRSRPGHDLRPCLASEHLRNAPHAGEARHREPG 345
           +R  P   L+P LAS H   +   G +    PG
Sbjct: 271 ARLNPNSSLQPSLASHHSHLSSALGRSACHSPG 303


>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 13/46 (28%), Positives = 22/46 (47%)
 Frame = -3

Query: 249 TVTSTASKSERIALLLLKHSEKENRQNFTSLYYENYALISTLSLFL 112
           TVT+  +    I ++L+ H      ++  + Y  +Y  ISTL   L
Sbjct: 143 TVTTILAAIVGIVMVLIIHPGDPRIKSVVTAYKADYTKISTLDAIL 188


>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 195 HSEKENRQNFTSLYYENYAL 136
           H E + +QN  SL  EN+ +
Sbjct: 34  HQEMQGKQNSASLNSENFGI 53


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 195 HSEKENRQNFTSLYYENYAL 136
           H E + +QN  SL  EN+ +
Sbjct: 34  HQEMQGKQNSASLNSENFGI 53


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -3

Query: 195 HSEKENRQNFTSLYYENYAL 136
           H E + +QN  SL  EN+ +
Sbjct: 34  HQEMQGKQNSASLNSENFGI 53


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -3

Query: 549 LVQQISTLSWQSSSPNLTSSTPH 481
           +V + S  S +S SP+L +S PH
Sbjct: 32  IVDRRSPSSSRSPSPSLLTSQPH 54


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,326
Number of Sequences: 438
Number of extensions: 4178
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)