Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H20
         (827 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces...    29   0.61 
SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subuni...    28   1.9  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    28   1.9  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   5.7  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   5.7  
SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual       26   5.7  
SPAC26A3.03c |rmi1||RecQ mediated genome instability protein Rmi...    26   5.7  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.7  
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    26   7.5  
SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|c...    25   9.9  
SPAC1B9.02c |sck1||serine/threonine protein kinase Sck1|Schizosa...    25   9.9  

>SPBC409.18 |||phosphatidic acid phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 279

 Score = 29.5 bits (63), Expect = 0.61
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = -3

Query: 672 LQYGVYNIRFYGFWRRYTFQHICYRHPYTLHFLLYTK 562
           L Y V+++    F R+++ + I   HP+ LH  + TK
Sbjct: 26  LSYFVFDVLMLPFTRQFSLEDITISHPFALHEQVPTK 62


>SPCC1259.03 |rpa12||DNA-directed RNA polymerase complex I subunit
           Rpa12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 119

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/28 (46%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
 Frame = -1

Query: 104 AXGVLLFC--CGGFLAVTQAXMNACGQC 27
           A G L+FC  CG  L  T A    C QC
Sbjct: 3   AIGSLIFCSECGNLLESTTAQWTTCDQC 30


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 117  FHRICXRRAVVLLRRIFSCNTSXNECV 37
            FH++  +    ++R I  C+ S NECV
Sbjct: 1065 FHKLSHKNPNEIIRMILHCDDSMNECV 1091


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 16/54 (29%), Positives = 29/54 (53%)
 Frame = +1

Query: 325  KILQIKHHRNDYAEQYPSVTLILNKTMTEESRLALEKWKQERISEMGVEEFNRF 486
            K+ Q +  +N Y +  P  T   N+T++  S+LA E  KQ+  S+  +E+   +
Sbjct: 1090 KLFQAEDTKNSYDQTSPEATQERNRTIS--SKLA-EMEKQKNESKAALEQMKNY 1140


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = -2

Query: 532 LKCCETWYQLPFELGKIY*ILQLPFRK 452
           LK  E++++ P E+ K   IL+LP RK
Sbjct: 110 LKSHESYWEPPLEISKDLKILRLPIRK 136


>SPCC663.12 |cid12||poly|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 336

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +1

Query: 586 GVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADYEDKPTLIEWKKSDKPRKSIX 765
           G  +S++DV  S+ SP+  E       +  R   DA AD+     +      D     + 
Sbjct: 70  GTTLSISDVDVSLKSPRVGELEKRRVTMVLRKYLDADADFHSSARVPRINLVDVSGIGVD 129

Query: 766 LTYDN 780
           LT+ N
Sbjct: 130 LTFGN 134


>SPAC26A3.03c |rmi1||RecQ mediated genome instability protein
           Rmi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 26/111 (23%), Positives = 50/111 (45%), Gaps = 2/111 (1%)
 Frame = +1

Query: 451 ISEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQPRSQLRIEKEVEGVWVS--VADVLKSI 624
           ++E+GV   NR+ Q+ +    K H+T  +   Q   Q  +  ++     S   A  + S 
Sbjct: 11  LTELGVRVQNRWLQSLLDYLAKKHSTGANTTPQLVMQYLVASDIRESTTSEGAAPYIVSE 70

Query: 625 SSPKAIESNVVHPVLKYRGIFDAIADYEDKPTLIEWKKSDKPRKSIXLTYD 777
                IE+ ++  +++ R I  +I +  +    +E  K  K +K I L +D
Sbjct: 71  QHNVRIENTMLLQIVRVREIGISIVNQLEYLNDLEELKKLKGQKVIRLVHD 121


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.7
 Identities = 23/88 (26%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
 Frame = +1

Query: 421 LALEKW--KQERISEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQPRSQLR--IEKEVEG 588
           + ++ W  +Q ++ E+G     + + +   + +   +  + Y T     LR  I  EV+G
Sbjct: 57  ITMDNWSERQVKMMEVGGNSNAKTFLSTDPMFSAAGSIREKYNTDIAEDLRQKIRAEVDG 116

Query: 589 V-WVSVADVLKSISSPKAIESNVVHPVL 669
           V WV V D  KS+SS  ++ S+   P +
Sbjct: 117 VEWVKV-DRPKSVSSHASVTSSSTVPTI 143


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = +2

Query: 428 WRS-GNKSGFPKWELKNLIDFTKLKWQLV-PSFT 523
           WR  G+K G  +W+LK   ++ +L  Q V PS T
Sbjct: 852 WRKMGSKIGTSEWDLKGGEEYVELMQQYVRPSLT 885


>SPAC6F6.04c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 489

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -1

Query: 167 ITVLCANGRITALLMTNFTXFAXGVLLFCCGG-FLAVT 57
           IT+    G++ +     F  F    +LFCC G +LAVT
Sbjct: 11  ITIPSVGGKLVS--SGQFQNFIASCILFCCPGIYLAVT 46


>SPAC1B9.02c |sck1||serine/threonine protein kinase
           Sck1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 9.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 455 PKWELKNLIDFTKLKWQLVPS 517
           P W+ + + D TK+K Q+V S
Sbjct: 218 PHWDFETVFDVTKMKSQMVVS 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.132    0.394 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,549,740
Number of Sequences: 5004
Number of extensions: 79034
Number of successful extensions: 226
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 222
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 226
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)