Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_H20
(827 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0699 - 24376987-24377154,24377259-24377406,24377530-243776... 32 0.48
07_03_1489 + 26933029-26933077,26933704-26933838,26934354-269344... 31 0.85
09_06_0343 - 22415525-22415833,22415999-22416134,22416593-224166... 29 4.5
01_05_0270 - 20271859-20272866,20273043-20273058,20273455-202737... 29 4.5
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337... 29 6.0
11_03_0010 - 8922361-8922375,8923888-8924610 28 7.9
10_06_0102 + 10758601-10758948,10759051-10759257,10759349-107595... 28 7.9
04_03_0500 + 16585157-16585201,16586840-16586978,16587456-165875... 28 7.9
01_07_0111 - 41137822-41138973,41139453-41139540,41139850-411399... 28 7.9
01_01_1234 - 10007446-10007940,10008030-10008125,10008980-100092... 28 7.9
>01_05_0699 -
24376987-24377154,24377259-24377406,24377530-24377645,
24377743-24377925,24377998-24378186,24378273-24378497,
24378514-24378759,24378836-24378983,24379126-24379241,
24379441-24379497,24379735-24379923,24380001-24380150,
24380323-24380404,24380484-24380601,24380713-24380899,
24381044-24381138,24381223-24381277,24381376-24381567,
24381657-24381853,24382534-24382684
Length = 1003
Score = 32.3 bits (70), Expect = 0.48
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +2
Query: 410 KSLGWLWRSGNKSGFPKWELKNLIDFTKLKWQL 508
K L + GN+ GFP W L+N I F L+W++
Sbjct: 230 KLLFGFYDHGNR-GFPGWALRNYIAFVSLRWKI 261
>07_03_1489 +
26933029-26933077,26933704-26933838,26934354-26934478,
26934558-26934626,26934730-26934798,26935095-26935157,
26935280-26936533
Length = 587
Score = 31.5 bits (68), Expect = 0.85
Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 2/110 (1%)
Frame = +1
Query: 238 NTAIRGLKTSVVCGTAKSSPAQPGYPSEDKILQIKHHRNDYA-EQYPSVTLILNKTMTEE 414
NTA K V + + AQ EDK +++K + ND +++ + I K E
Sbjct: 57 NTAGSACKKRVKASSLDNVKAQCHMILEDKRIELKEYLNDLCHDKHKVIDNICKKYELEN 116
Query: 415 SRLA-LEKWKQERISEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQPRSQ 561
+ +K K E++S + N+ + + G K NT++ + T P +
Sbjct: 117 IEITNAKKQKAEKLSREMKNKCNK--KMPKSQGAKVLNTMRFFHTTPSKE 164
>09_06_0343 -
22415525-22415833,22415999-22416134,22416593-22416697,
22417696-22418291
Length = 381
Score = 29.1 bits (62), Expect = 4.5
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Frame = -3
Query: 597 HP-YTLHFL---LYTKLATRLSEVIL*SVVKLGTNCHLSLVKSIK 475
HP YTL F L +A L+ V+L ++ KLGTN H S ++ ++
Sbjct: 158 HPDYTLTFTGHSLGAGIAAMLTVVVLLNLDKLGTNLHRSRIRCLR 202
>01_05_0270 -
20271859-20272866,20273043-20273058,20273455-20273756,
20273932-20274231
Length = 541
Score = 29.1 bits (62), Expect = 4.5
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +1
Query: 553 RSQLRIEKEVEGVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADY 705
RS + +GV SV + +I +PK +E + VHP L+ + DY
Sbjct: 239 RSLETVSHTFDGVLRSVLKLAANIINPKDLEFSTVHPCLENPDFWPHFNDY 289
>11_01_0442 -
3369827-3370168,3370608-3372616,3372953-3373277,
3373386-3373415
Length = 901
Score = 28.7 bits (61), Expect = 6.0
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 4/82 (4%)
Frame = +1
Query: 397 KTMTEESRLALEKWKQERISEMGVEEFNRFYQAQMAVG----TKFHNTLKDYFTQPRSQL 564
KTM EE + +E K E ++GVE +A++ V K H T+ D +
Sbjct: 591 KTMYEELVVQMESMKIESEKKLGVESAKEALEARLLVVNSEIAKLHGTVNDLECDAAKEK 650
Query: 565 RIEKEVEGVWVSVADVLKSISS 630
E++ +V + K + S
Sbjct: 651 AFSSELKMQLEAVEGIRKMLES 672
>11_03_0010 - 8922361-8922375,8923888-8924610
Length = 245
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = -1
Query: 752 LGLSDFFHSIKVGLSS*SAMASKIPLYFSTGC 657
L + D HSI GLS+ S +P +STGC
Sbjct: 177 LPVEDRLHSIHDGLSALFRDGSDVPAAYSTGC 208
>10_06_0102 + 10758601-10758948,10759051-10759257,10759349-10759507,
10759617-10759709,10759913-10760008,10760457-10760724,
10760805-10761047,10761298-10761422,10761499-10761615,
10761705-10761779,10761886-10761942,10762035-10762139,
10762244-10762330,10762790-10763047,10763075-10763263,
10763418-10763528,10763640-10763729,10763814-10763990,
10764075-10764152,10764412-10764726,10764819-10765162,
10765304-10765541,10765631-10765998,10766106-10766316,
10766622-10766801,10766886-10769045,10769151-10769207
Length = 2251
Score = 28.3 bits (60), Expect = 7.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -2
Query: 658 VQHSILWLLEKIYFSTHLLQTPIHPPLPSLYE 563
++HS W ++KIY+ + + PPL + E
Sbjct: 1228 MRHSFQWSVDKIYYEEDPMLRHVEPPLSTFLE 1259
>04_03_0500 +
16585157-16585201,16586840-16586978,16587456-16587577,
16588850-16588900,16589289-16589601,16592816-16593162
Length = 338
Score = 28.3 bits (60), Expect = 7.9
Identities = 8/13 (61%), Positives = 10/13 (76%)
Frame = -2
Query: 712 CLRNQQWHQKFPY 674
C RN+ WHQ+ PY
Sbjct: 63 CARNRSWHQRLPY 75
>01_07_0111 -
41137822-41138973,41139453-41139540,41139850-41139969,
41140165-41140211,41140796-41141029,41141305-41141505,
41141506-41143407,41144140-41145303,41145574-41145879
Length = 1737
Score = 28.3 bits (60), Expect = 7.9
Identities = 19/57 (33%), Positives = 25/57 (43%)
Frame = -2
Query: 532 LKCCETWYQLPFELGKIY*ILQLPFRKSALVSTSPKPT*TLQSLFYLILVSPMGIVQ 362
L C QLP +LG +Y + L V PK L+ L YL L G++Q
Sbjct: 762 LSDCHELEQLPEDLGNLYRLEVLDMSDCYRVQVLPKTFCQLKHLKYLNLSDCHGLIQ 818
>01_01_1234 -
10007446-10007940,10008030-10008125,10008980-10009253,
10009381-10009682,10010078-10010123,10010319-10010368,
10011124-10011268,10012051-10012229,10012327-10012485,
10012636-10012887,10012972-10013097,10013197-10013525,
10014183-10014252
Length = 840
Score = 28.3 bits (60), Expect = 7.9
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 235 NNTAIRGLKTSVVCGTAKS-SPAQPGYPSEDKILQIKHHRNDYAEQY 372
N + TS C T S S QPGYPS+ + L ++ + + Q+
Sbjct: 510 NGGGTQSFDTSEHCSTVPSDSDEQPGYPSQFEPLHMEQTNDMFLSQF 556
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,415,555
Number of Sequences: 37544
Number of extensions: 472964
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1225
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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