Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_H20
(827 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC016869-1|AAH16869.1| 344|Homo sapiens chromosome 20 open read... 115 2e-25
AL121585-6|CAC35072.1| 344|Homo sapiens chromosome 20 open read... 115 2e-25
AK027503-1|BAB55160.1| 344|Homo sapiens protein ( Homo sapiens ... 115 2e-25
AL121585-5|CAI14860.1| 264|Homo sapiens chromosome 20 open read... 82 3e-15
AL121585-7|CAI14861.1| 252|Homo sapiens chromosome 20 open read... 43 0.001
BC032637-1|AAH32637.1| 317|Homo sapiens ring finger protein 41 ... 30 8.9
AF077599-1|AAC27647.1| 317|Homo sapiens hypothetical SBBI03 pro... 30 8.9
>BC016869-1|AAH16869.1| 344|Homo sapiens chromosome 20 open reading
frame 72 protein.
Length = 344
Score = 115 bits (277), Expect = 2e-25
Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Frame = +1
Query: 373 PSVTLILNKTMTEESRLALEKWKQERISEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQP 552
PSVT +L +TMT++ LE+WKQ I E+G + F + G +FH L+ + P
Sbjct: 131 PSVTRVLQQTMTKQQVFLLERWKQRMILELGEDGFKEYTSNVFLQGKRFHEALESILS-P 189
Query: 553 RSQLRIEKE---VEGVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADYEDKPTL 723
+ L+ E G SV +LK +S +A+ES V H L Y G+ D +A+Y+ K +
Sbjct: 190 QETLKERDENLLKSGYIESVQHILKDVSGVRALESAVQHETLNYIGLLDCVAEYQGKLCV 249
Query: 724 IEWKKSDKPRKSIXLTYDNPVXLAAYFGAVCND 822
I+WK S+KP+ I T+DNP+ + AY GA+ +D
Sbjct: 250 IDWKTSEKPKPFIQSTFDNPLQVVAYMGAMNHD 282
>AL121585-6|CAC35072.1| 344|Homo sapiens chromosome 20 open reading
frame 72 protein.
Length = 344
Score = 115 bits (277), Expect = 2e-25
Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Frame = +1
Query: 373 PSVTLILNKTMTEESRLALEKWKQERISEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQP 552
PSVT +L +TMT++ LE+WKQ I E+G + F + G +FH L+ + P
Sbjct: 131 PSVTRVLQQTMTKQQVFLLERWKQRMILELGEDGFKEYTSNVFLQGKRFHEALESILS-P 189
Query: 553 RSQLRIEKE---VEGVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADYEDKPTL 723
+ L+ E G SV +LK +S +A+ES V H L Y G+ D +A+Y+ K +
Sbjct: 190 QETLKERDENLLKSGYIESVQHILKDVSGVRALESAVQHETLNYIGLLDCVAEYQGKLCV 249
Query: 724 IEWKKSDKPRKSIXLTYDNPVXLAAYFGAVCND 822
I+WK S+KP+ I T+DNP+ + AY GA+ +D
Sbjct: 250 IDWKTSEKPKPFIQSTFDNPLQVVAYMGAMNHD 282
>AK027503-1|BAB55160.1| 344|Homo sapiens protein ( Homo sapiens
cDNA FLJ14597 fis, clone NT2RM4002390. ).
Length = 344
Score = 115 bits (277), Expect = 2e-25
Identities = 58/153 (37%), Positives = 88/153 (57%), Gaps = 3/153 (1%)
Frame = +1
Query: 373 PSVTLILNKTMTEESRLALEKWKQERISEMGVEEFNRFYQAQMAVGTKFHNTLKDYFTQP 552
PSVT +L +TMT++ LE+WKQ I E+G + F + G +FH L+ + P
Sbjct: 131 PSVTRVLQQTMTKQQVFLLERWKQRMILELGEDGFKEYTSNVFLQGKRFHEALESILS-P 189
Query: 553 RSQLRIEKE---VEGVWVSVADVLKSISSPKAIESNVVHPVLKYRGIFDAIADYEDKPTL 723
+ L+ E G SV +LK +S +A+ES V H L Y G+ D +A+Y+ K +
Sbjct: 190 QETLKERDENLLKSGYIESVQHILKDVSGVRALESAVQHETLNYIGLLDCVAEYQGKLCV 249
Query: 724 IEWKKSDKPRKSIXLTYDNPVXLAAYFGAVCND 822
I+WK S+KP+ I T+DNP+ + AY GA+ +D
Sbjct: 250 IDWKTSEKPKPFIQSTFDNPLQVVAYMGAMNHD 282
>AL121585-5|CAI14860.1| 264|Homo sapiens chromosome 20 open reading
frame 72 protein.
Length = 264
Score = 81.8 bits (193), Expect = 3e-15
Identities = 41/108 (37%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Frame = +1
Query: 508 GTKFHNTLKDYFTQPRSQLRIEKE---VEGVWVSVADVLKSISSPKAIESNVVHPVLKYR 678
G +FH L+ + P+ L+ E G SV +LK +S +A+ES V H L Y
Sbjct: 96 GKRFHEALESILS-PQETLKERDENLLKSGYIESVQHILKDVSGVRALESAVQHETLNYI 154
Query: 679 GIFDAIADYEDKPTLIEWKKSDKPRKSIXLTYDNPVXLAAYFGAVCND 822
G+ D +A+Y+ K +I+WK S+KP+ I T+DNP+ + AY GA+ +D
Sbjct: 155 GLLDCVAEYQGKLCVIDWKTSEKPKPFIQSTFDNPLQVVAYMGAMNHD 202
>AL121585-7|CAI14861.1| 252|Homo sapiens chromosome 20 open reading
frame 72 protein.
Length = 252
Score = 43.2 bits (97), Expect = 0.001
Identities = 18/43 (41%), Positives = 27/43 (62%)
Frame = +1
Query: 373 PSVTLILNKTMTEESRLALEKWKQERISEMGVEEFNRFYQAQM 501
PSVT +L +TMT++ LE+WKQ I E+G + F + + M
Sbjct: 131 PSVTRVLQQTMTKQQVFLLERWKQRMILELGEDGFKEYTSSSM 173
>BC032637-1|AAH32637.1| 317|Homo sapiens ring finger protein 41
protein.
Length = 317
Score = 30.3 bits (65), Expect = 8.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 22 APHCPHAFIXACVTAKNPPQQ 84
APHC HAF AC+T QQ
Sbjct: 31 APHCEHAFCNACITQWFSQQQ 51
>AF077599-1|AAC27647.1| 317|Homo sapiens hypothetical SBBI03
protein protein.
Length = 317
Score = 30.3 bits (65), Expect = 8.9
Identities = 12/21 (57%), Positives = 13/21 (61%)
Frame = +1
Query: 22 APHCPHAFIXACVTAKNPPQQ 84
APHC HAF AC+T QQ
Sbjct: 31 APHCEHAFCNACITQWFSQQQ 51
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.317 0.132 0.394
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 124,029,939
Number of Sequences: 237096
Number of extensions: 2839761
Number of successful extensions: 6028
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6025
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10370898348
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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