Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H19
         (664 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.    29   0.099
AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.    27   0.40 
AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.    25   1.6  
CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transpos...    24   4.9  
AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.    23   6.5  
AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.          23   6.5  

>AJ535206-1|CAD59406.1| 1376|Anopheles gambiae SMC4 protein protein.
          Length = 1376

 Score = 29.5 bits (63), Expect = 0.099
 Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 5/103 (4%)
 Frame = +3

Query: 360  DIKKCKKTFEYKKNNNDTVPEEL----SVWKEYENLKKRLQEAESNLKQNKQELHLLIEK 527
            +IK  ++  +  K+  +++ +E+    S  ++  + + +L+E  + L++  +E+ L IEK
Sbjct: 922  EIKTSERNVQKSKDKINSMEDEVEAAQSAIRKGNDERTQLEEEANKLREELEEMKLAIEK 981

Query: 528  VSTKLTQRKESQCHVQDAERRVLLLQKVSEQ-LQSKKTDLXET 653
                 +  K+    +Q  E    + +   EQ LQ+ +T L ET
Sbjct: 982  AHEGSSSIKKEIVALQKREAEGKMKRLEFEQILQTIETKLQET 1024



 Score = 24.2 bits (50), Expect = 3.7
 Identities = 20/74 (27%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
 Frame = +3

Query: 456 KKRLQEAESNLKQNKQELHLLIEKVSTKLTQRKESQCHVQ------DAERRVLLLQKVSE 617
           +KRL E +   K+NK+E+     K+ +   Q+ E +  +         E +VLL +K  E
Sbjct: 410 EKRLLELQDVPKKNKKEIEESEAKIESLTRQKTEVEAKLTANLATLKDETKVLLEEK--E 467

Query: 618 QLQSKKTDLXETMN 659
           +LQ++  +L   ++
Sbjct: 468 KLQTELIELKRAVD 481


>AJ535204-1|CAD59404.1| 1187|Anopheles gambiae SMC2 protein protein.
          Length = 1187

 Score = 27.5 bits (58), Expect = 0.40
 Identities = 19/61 (31%), Positives = 33/61 (54%)
 Frame = +3

Query: 354 IDDIKKCKKTFEYKKNNNDTVPEELSVWKEYENLKKRLQEAESNLKQNKQELHLLIEKVS 533
           +  I+K    F   K  +D +  EL+      NLK+RL  A+++ +Q K+E+  L +K+ 
Sbjct: 700 VSKIEKTAHRFGQLKEQHDMLNYELN------NLKQRL--AQTSFQQTKEEIEELNKKIE 751

Query: 534 T 536
           T
Sbjct: 752 T 752


>AJ535203-1|CAD59403.1| 1229|Anopheles gambiae SMC1 protein protein.
          Length = 1229

 Score = 25.4 bits (53), Expect = 1.6
 Identities = 19/69 (27%), Positives = 35/69 (50%)
 Frame = +3

Query: 303 EEVESKNVIKFKKQLVFIDDIKKCKKTFEYKKNNNDTVPEELSVWKEYENLKKRLQEAES 482
           +++ES+     K+Q   ID IK  +   E +K     +  ELS  ++    K+R+ E +S
Sbjct: 432 KKIESEKNEALKRQEKLIDHIKTSRLGLEEQKR----IKAELS--QDVGTSKERIHELQS 485

Query: 483 NLKQNKQEL 509
            L   +++L
Sbjct: 486 ELDNVREQL 494


>CR954257-14|CAJ14165.1| 1726|Anopheles gambiae BEL12_AG transposon
           polyprotein protein.
          Length = 1726

 Score = 23.8 bits (49), Expect = 4.9
 Identities = 6/19 (31%), Positives = 13/19 (68%)
 Frame = +3

Query: 276 YYIVWRSLMEEVESKNVIK 332
           YY+ W +L++  ++  V+K
Sbjct: 188 YYVTWEALLKRYDNSKVLK 206


>AJ535208-1|CAD59408.1| 1133|Anopheles gambiae SMC6 protein protein.
          Length = 1133

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 18/70 (25%), Positives = 37/70 (52%)
 Frame = +3

Query: 447 ENLKKRLQEAESNLKQNKQELHLLIEKVSTKLTQRKESQCHVQDAERRVLLLQKVSEQLQ 626
           +++KK  QE  +N +Q +Q   ++ E  + + T R+E    ++ +   +  LQK  E+ Q
Sbjct: 751 QHMKKLQQELLTNEQQLQQLAGVVFEGETEETTLREE----LEHSRTILAKLQKGIEEEQ 806

Query: 627 SKKTDLXETM 656
           +K   +  T+
Sbjct: 807 AKLDQVRRTV 816


>AF042732-2|AAC18057.1|  179|Anopheles gambiae TU37B2 protein.
          Length = 179

 Score = 23.4 bits (48), Expect = 6.5
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +3

Query: 501 QELHLLIEKVSTKLTQRKESQCHVQDAERRVLLLQKVSEQLQSKKTDL 644
           Q+L   +EK S KL +RKE+     D   +   +++  E+L++   DL
Sbjct: 34  QKLKGEVEKQSKKLEKRKETLGESLDKNHK-KKIERDEEKLKNNNRDL 80


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 612,705
Number of Sequences: 2352
Number of extensions: 11307
Number of successful extensions: 26
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66068490
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)