Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H19
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   3.4  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   6.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   6.0  
DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    21   7.9  

>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/32 (25%), Positives = 19/32 (59%)
 Frame = -1

Query: 376 LHFLMSSIKTSCFLNLITFFDSTSSIRLRHTI 281
           L+  ++ +  S F+NL  ++D  +++ L  T+
Sbjct: 125 LNDYINRLNYSAFVNLTAYYDGGANLNLNGTV 156


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 407 IVILFIFKSLFAFFNVIYKDQLFFK 333
           ++    F  +FAFFN+ Y     F+
Sbjct: 417 VISRIFFPIVFAFFNLAYWSTYLFR 441


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/25 (32%), Positives = 13/25 (52%)
 Frame = -3

Query: 407 IVILFIFKSLFAFFNVIYKDQLFFK 333
           ++    F  +FAFFN+ Y     F+
Sbjct: 417 VISRIFFPIVFAFFNLAYWSTYLFR 441


>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 47  CLIYYFLVANAILFNI 94
           CL Y+    N IL+N+
Sbjct: 303 CLYYFSTTINPILYNV 318


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,277
Number of Sequences: 438
Number of extensions: 3293
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)