Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H18
         (372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   1.3  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   1.3  
EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    22   2.3  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   2.3  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 137 CYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELG 265
           CY     G     S+  S++ +C RY  A D        D LG
Sbjct: 616 CYHAVAPGTDIRQSIALSRKKKCIRYMEAGDGNDGNQSDDNLG 658


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 1.3
 Identities = 13/43 (30%), Positives = 17/43 (39%)
 Frame = +2

Query: 137 CYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELG 265
           CY     G     S+  S++ +C RY  A D        D LG
Sbjct: 508 CYHAVAPGTDIRQSIALSRKKKCIRYMEAGDGNDGNQSDDNLG 550


>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 81  DPALCFGANPWIN 119
           D  +CF A PW N
Sbjct: 311 DFVVCFNAKPWSN 323


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.8 bits (44), Expect = 2.3
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = -3

Query: 316 YVRIFFCLGKGTYRGVSAQLIFTRLVYDSIVRAEV 212
           + +++ CL K +   V ++ +  R V +    AEV
Sbjct: 95  HAQVYVCLAKNSVGSVHSRDVNVRAVVNQYYEAEV 129


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,524
Number of Sequences: 336
Number of extensions: 1586
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)