Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_H18
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces pom... 33 0.014
SPBC3H7.15 |hhp1||serine/threonine protein kinase Hhp1|Schizosac... 27 0.94
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 1.6
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 25 2.9
SPBC2G2.09c |crs1|mug17|meiosis specific cyclin Crs1|Schizosacch... 25 2.9
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 25 5.0
SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces... 25 5.0
SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces pomb... 25 5.0
SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit S5|S... 24 6.7
SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb... 24 8.8
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 24 8.8
>SPBC4.05 |mlo2||zinc finger protein Mlo2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 329
Score = 33.1 bits (72), Expect = 0.014
Identities = 10/31 (32%), Positives = 20/31 (64%)
Frame = -1
Query: 294 LVKVHTGVSLPSSSLHDWCMTASCAQKYRVH 202
L K + G+++P + +W + + C++KYR H
Sbjct: 153 LQKTNKGIAIPDAETFEWLVCSECSEKYRDH 183
>SPBC3H7.15 |hhp1||serine/threonine protein kinase
Hhp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 365
Score = 27.1 bits (57), Expect = 0.94
Identities = 14/46 (30%), Positives = 26/46 (56%)
Frame = -3
Query: 346 SRRLCLKNADYVRIFFCLGKGTYRGVSAQLIFTRLVYDSIVRAEVS 209
SRR L++ YV ++FC G ++G+ A + Y+ I+ ++S
Sbjct: 193 SRRDDLESLGYVLVYFCRGSLPWQGLKATT--KKQKYEKIMEKKIS 236
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 1.6
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +1
Query: 181 NILEGSRMHPILLRARCCHTP 243
N EG HP+LLR HTP
Sbjct: 2072 NASEGLLKHPLLLRNNLIHTP 2092
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 2.9
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = -3
Query: 346 SRRLCLKNADYVRIFFCLGKGTYRGVSA 263
SRR L++ YV ++FC G ++G+ A
Sbjct: 192 SRRDDLESLGYVLLYFCRGSLPWQGLQA 219
>SPBC2G2.09c |crs1|mug17|meiosis specific cyclin
Crs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 229
Score = 25.4 bits (53), Expect = 2.9
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 6/80 (7%)
Frame = +3
Query: 93 CFGANPWINLVAFKAVTSGSSMVSFPLIL*HTRRKQN-----APDTSARTMLSYTNRVKM 257
CF P I +FK G ++F L ++ K++ AP S + + Y ++ +
Sbjct: 117 CFTVKPTIPTTSFKIYAIGCLFIAFKLTSDYSVAKKSFCENLAPSLSTKNLEKY-EKIVL 175
Query: 258 SWAETPLYV-PLPRQKKILT 314
+ +YV LP + LT
Sbjct: 176 ALLNFDIYVISLPSVESFLT 195
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 24.6 bits (51), Expect = 5.0
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +3
Query: 51 CVCVTLVFGGDPALCFGANPWINLVAFKAVTSGSSMVSFPLIL*HTRRKQNAPDTSARTM 230
CV V +FG DP F P + + V SS + + KQ+ PD S +
Sbjct: 277 CVHVKKLFGFDPTKTFQVPPEVYAYYKERVAIASSAEEEYKKM-YASYKQSYPDLSNQLE 335
Query: 231 LSYTNRVKMSWAE-TPLYVP 287
+ + W + P+Y P
Sbjct: 336 RILSRKFPEGWEKHLPVYKP 355
>SPBC3B8.10c |||NLI interacting factor family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 476
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = +3
Query: 159 VSFPLIL*HTRRKQNAPDTSARTMLSYTNRVKMSWAETPLYVPLPRQK 302
V FP++L + RR+ P S R Y++ S + P Y R +
Sbjct: 131 VFFPVLLSYKRREMLPPQPSVRRPRFYSSYSYPSSHQDPAYSSFKRHR 178
>SPBC3H7.08c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 120
Score = 24.6 bits (51), Expect = 5.0
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = -1
Query: 315 MLGFSSALVKVHTGVSLPSSSLHDWCMTASCAQK 214
MLG LV+ V +PS + H W T S + K
Sbjct: 39 MLGQRGLLVQHEDQVRIPSKNAHPWEDTKSSSGK 72
>SPAC4G9.17c |mrps5||mitochondrial ribosomal protein subunit
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 387
Score = 24.2 bits (50), Expect = 6.7
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -1
Query: 216 KYRVHSASFEYVTESKGRTPSNSLM*QP*RPLNLSR 109
K + +S+S +ES+G+T SN+ P + NLS+
Sbjct: 59 KEQFNSSSIPRESESEGKTASNTSPLSPKKVENLSK 94
>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 955
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 24 NMSLKTLVFCVCVTLVFGGDPALC 95
N+S + V + LVF DP+LC
Sbjct: 866 NISDASAVLIPLIRLVFAADPSLC 889
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 8.8
Identities = 11/30 (36%), Positives = 21/30 (70%), Gaps = 1/30 (3%)
Frame = -3
Query: 172 KGKDTIELPDV-TALKATKFIQGLAPKQSA 86
+G++ + + D+ TAL A K ++ +APK+ A
Sbjct: 442 EGENFVTIFDIETALPARKTVEVIAPKEGA 471
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,386,286
Number of Sequences: 5004
Number of extensions: 25190
Number of successful extensions: 67
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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