Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H18
         (372 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0227 + 42144437-42144446,42145059-42145428,42145528-421456...    30   0.67 
07_03_1242 + 25113464-25114150                                         28   2.0  
03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,449...    28   2.0  
10_08_0452 - 18038182-18038253,18038338-18038415,18038502-180385...    27   4.7  
10_08_0066 + 14610220-14610798,14610928-14611287                       27   6.2  
02_01_0254 - 1669461-1669590,1669833-1672318                           27   6.2  
10_05_0085 - 9005539-9005922,9006207-9006463,9006707-9006883,900...    26   8.2  
03_03_0060 - 14157352-14158851                                         26   8.2  

>01_07_0227 +
           42144437-42144446,42145059-42145428,42145528-42145649,
           42145767-42145935,42146236-42146545,42146742-42146825,
           42147012-42147083,42147780-42147821,42147931-42148020,
           42148106-42148213,42148292-42148384,42148540-42148619,
           42148701-42148953,42151222-42151236
          Length = 605

 Score = 29.9 bits (64), Expect = 0.67
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 137 CYIREFDGVLPFDSVTYSKEAECTRYFCAH 226
           C I+  + +L   +   SK A+C RYFC H
Sbjct: 182 CLIKMLEEILERAAEISSKLAQCDRYFCGH 211


>07_03_1242 + 25113464-25114150
          Length = 228

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 164 LPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDT 274
           LP   V Y     C  + C+ D  IH++C D   RDT
Sbjct: 35  LPITGVGY----RCNHHHCS-DFTIHEACADRFARDT 66


>03_01_0611 + 4493618-4493641,4494705-4494730,4495758-4497471,
            4498179-4499263,4499351-4500296
          Length = 1264

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +3

Query: 168  PLIL*HTRRKQNAPDTSARTMLSYTNRVKMSWAETPLYVPLP 293
            P  L H+ + +N  D  AR   +  N  K SW +T    P P
Sbjct: 1071 PSELKHSSKLENGSDIEARPPSARNNHEKSSWLQTAKEQPAP 1112


>10_08_0452 -
           18038182-18038253,18038338-18038415,18038502-18038579,
           18039112-18039168,18039276-18039349,18039424-18039495,
           18039609-18039670,18039861-18039962,18040378-18040490,
           18040809-18040940,18041156-18041243,18041617-18041711,
           18041793-18042023,18042567-18042680,18042765-18042866,
           18043091-18043207,18043301-18044146
          Length = 810

 Score = 27.1 bits (57), Expect = 4.7
 Identities = 18/62 (29%), Positives = 28/62 (45%)
 Frame = +1

Query: 136 LLHQGVRWCPSL*FCNILEGSRMHPILLRARCCHTPIV*R*AGQRHPCMYLYQGRRKS*H 315
           +L  GV   P +  C+   G  + P+L +A    + I+ +  G  + C Y Y G R   H
Sbjct: 415 ILEVGVWKLPEI--CSFSIGVPVGPMLAKATKSVSEIIDKFQGLEYTCEYKYDGERAQIH 472

Query: 316 NL 321
            L
Sbjct: 473 CL 474


>10_08_0066 + 14610220-14610798,14610928-14611287
          Length = 312

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 328 KNADYVRIFFCLGKGTYRGVSAQLIFTRL 242
           + A+Y+  F CL     +GV A+ IF+ L
Sbjct: 72  EKAEYMAFFLCLDDTASKGVEAKAIFSLL 100


>02_01_0254 - 1669461-1669590,1669833-1672318
          Length = 871

 Score = 26.6 bits (56), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +3

Query: 210 DTSARTMLSYTNRVKMSWAE 269
           D SART++  T RVK  W +
Sbjct: 830 DDSARTVMKITKRVKTGWGQ 849


>10_05_0085 -
           9005539-9005922,9006207-9006463,9006707-9006883,
           9007349-9007490,9007814-9007904,9009024-9010942
          Length = 989

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -3

Query: 196 FLRVCYRIKGKDTIELPDVTALK 128
           +++ C + KGK T+E+P  T +K
Sbjct: 928 YIQKCKKAKGKKTLEIPIKTTIK 950


>03_03_0060 - 14157352-14158851
          Length = 499

 Score = 26.2 bits (55), Expect = 8.2
 Identities = 18/47 (38%), Positives = 24/47 (51%)
 Frame = +2

Query: 137 CYIREFDGVLPFDSVTYSKEAECTRYFCAHDAVIHQSCKDELGRDTP 277
           C++R  DGV+P +S T   E  CT     +  V   SC  E+  DTP
Sbjct: 251 CFVRSGDGVVP-ESTTTGMEL-CT--IGGNGGVSVGSCWREIVADTP 293


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,165,771
Number of Sequences: 37544
Number of extensions: 173294
Number of successful extensions: 421
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)