Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H18
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   6.2  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   6.2  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    20   8.2  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 201 NAPDTSARTMLSYTNRVKMSWAETPLYVPLPR 296
           N   TSAR  L  T  + M+   T +   LPR
Sbjct: 266 NHEATSARVALGITTVLTMTTISTGVRSSLPR 297


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +2

Query: 212 YFCAHDAVIHQSCKDE 259
           + C H+ V+H+  K E
Sbjct: 23  HHCHHNGVVHRDLKPE 38


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 175 IKGKDTIELPDVTALKATKFIQGL 104
           +KG D IE P      AT  I+ L
Sbjct: 578 LKGIDAIEFPRSITRNATALIKKL 601


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,008
Number of Sequences: 438
Number of extensions: 1670
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)