Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H17
         (833 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039...    29   4.6  
02_01_0562 + 4129852-4130235,4130355-4130453,4131046-4131146,413...    29   6.0  

>02_05_0484 -
           29401195-29401404,29401572-29401755,29401866-29403973,
           29404320-29404403,29404507-29404777,29404864-29405117,
           29405513-29405722,29406357-29406503
          Length = 1155

 Score = 29.1 bits (62), Expect = 4.6
 Identities = 20/76 (26%), Positives = 37/76 (48%)
 Frame = +3

Query: 81  SIKMEFVGKKYKMTSSENFDEFMKTIGVGLITRKAANAVTPTVELRKDGDEYNLVTSSTF 260
           S+K   V +K K+   +N         + L   +    +  T +L+K+ DEY + ++S  
Sbjct: 444 SLKATVVAEKEKILQEQN--------NLKLTEEERQEHIMLTAQLKKEIDEYRMRSNSLS 495

Query: 261 KTTEMKFKPGEEFEED 308
           + TE   K  ++FEE+
Sbjct: 496 EETEDLRKQRQKFEEE 511


>02_01_0562 +
           4129852-4130235,4130355-4130453,4131046-4131146,
           4131229-4131300,4131712-4131802,4132005-4132085,
           4132263-4132331,4132634-4132690,4132776-4132898,
           4133000-4133038,4133255-4133380
          Length = 413

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +3

Query: 540 RHNYVYLASILYISPF*LFCKTNFSFHISHRLPFELQKRVAVTL 671
           RH  + LA  LY + F L+CK      +  R+P  + KR   TL
Sbjct: 256 RHALLILADHLYYNKFELYCKPVTGITVGTRVPGFIPKRENDTL 299


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,861,440
Number of Sequences: 37544
Number of extensions: 424838
Number of successful extensions: 1033
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1008
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1033
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2303447664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)