Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H14
         (633 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A3FPP3 Cluster: FALZ protein; n=2; Cryptosporidium|Rep:...    38   0.26 
UniRef50_Q4UFB8 Cluster: Putative uncharacterized protein; n=1; ...    35   1.9  
UniRef50_Q7T2X3 Cluster: Low-density lipoprotein receptor precur...    33   5.7  
UniRef50_A6Q959 Cluster: Mn2+/Zn2+ ABC transporter, permease; n=...    33   7.5  

>UniRef50_A3FPP3 Cluster: FALZ protein; n=2; Cryptosporidium|Rep:
           FALZ protein - Cryptosporidium parvum Iowa II
          Length = 1782

 Score = 37.5 bits (83), Expect = 0.26
 Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 3/64 (4%)
 Frame = -1

Query: 465 VIKVNF--LVNIRRTLISXXXXXXXXX*GSLVPSSIRSHPR-PLIPNSLYSTGSSIPLDN 295
           +IKVNF  L+N+ ++ I+           S++P+S    P  P + ++LY T  + P  N
Sbjct: 150 IIKVNFELLINVPKSPITYVIENDNSINISIIPNSHSKLPWFPTLSSALYLTEDASPFWN 209

Query: 294 SPWS 283
           SPWS
Sbjct: 210 SPWS 213


>UniRef50_Q4UFB8 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 694

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = -2

Query: 248 RNAIDSMMMTIPLIIAAKMNGSI--LSYNNYPEKILTL*SIEGIAFYYVLNLLCTFNSFN 75
           RN  + +    P+ +  ++NG I  L YNNY  KI      + I +YY++N  CT   FN
Sbjct: 602 RNWYEKIYKIPPIELYTEINGKIILLDYNNY--KIYLKDINKNICYYYIINEKCTEIKFN 659


>UniRef50_Q7T2X3 Cluster: Low-density lipoprotein receptor
           precursor; n=1; Gallus gallus|Rep: Low-density
           lipoprotein receptor precursor - Gallus gallus (Chicken)
          Length = 891

 Score = 33.1 bits (72), Expect = 5.7
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 291 GCCPKGWRTRSSTSC*ESKGADESECCSAPSC 386
           GC P+GWR   S  C  S G+DE + C  P C
Sbjct: 221 GCVPRGWRCDGSPDC--SDGSDE-DGCDPPLC 249


>UniRef50_A6Q959 Cluster: Mn2+/Zn2+ ABC transporter, permease; n=6;
           Bacteria|Rep: Mn2+/Zn2+ ABC transporter, permease -
           Sulfurovum sp. (strain NBC37-1)
          Length = 268

 Score = 32.7 bits (71), Expect = 7.5
 Identities = 16/43 (37%), Positives = 26/43 (60%)
 Frame = -2

Query: 227 MMTIPLIIAAKMNGSILSYNNYPEKILTL*SIEGIAFYYVLNL 99
           M+TIP+ IA K++ S+ S       I T+ ++ G+ F Y+ NL
Sbjct: 200 MLTIPVYIAEKLSNSLFSMMLLSGAIATVFTLVGLWFSYIYNL 242


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 383,937,333
Number of Sequences: 1657284
Number of extensions: 5481530
Number of successful extensions: 12733
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12469
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12726
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 46881492319
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)