Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H14
         (633 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical ...    29   2.8  
AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical...    27   8.4  

>AC084154-8|AAK29877.1|   69|Caenorhabditis elegans Hypothetical
           protein Y22D7AR.10 protein.
          Length = 69

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 10/26 (38%), Positives = 11/26 (42%)
 Frame = +3

Query: 294 CCPKGWRTRSSTSC*ESKGADESECC 371
           CCP GW       C  +   DE  CC
Sbjct: 39  CCPDGWEFGGRAPCPANPNMDEVWCC 64


>AF016430-11|AAB65375.1|  387|Caenorhabditis elegans Hypothetical
           protein C05C8.8 protein.
          Length = 387

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = -2

Query: 173 YNNYPEKILTL*SIEGIAFYYVLNLLCTFNSFNTFSIFVNTFQQSLRDFSICKYLH 6
           +NN+ +KI+ L  +  I F + L ++     FN  S+ +N F+++   FSI  Y H
Sbjct: 2   FNNF-KKIVIL-CLRLIIFCFGLGII-----FNQISLLINVFKEANHSFSIHLYSH 50


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,940,810
Number of Sequences: 27780
Number of extensions: 136437
Number of successful extensions: 301
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 301
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1395683256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)