Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H12
         (749 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0538 + 4646772-4647059,4647462-4647542,4647819-4647890,464...   110   1e-24
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    80   2e-15
03_03_0070 - 14256143-14257492                                         30   2.3  
02_04_0496 + 23446039-23446964,23452755-23452845,23452946-234529...    29   5.2  

>05_01_0538 +
           4646772-4647059,4647462-4647542,4647819-4647890,
           4648458-4649321
          Length = 434

 Score =  110 bits (265), Expect = 1e-24
 Identities = 62/168 (36%), Positives = 86/168 (51%)
 Frame = +1

Query: 244 LNPLILANIQGSSYFKVHLFKLKTYHEVVDEIYYQVKHLEPWERGSRKTSXXXXXXXXXX 423
           +  ++  NI  S YFK  L++LKTYHEV+DEIY QV H+EPW  G+ +            
Sbjct: 14  MEKVLCMNIMSSDYFK-ELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR------------ 60

Query: 424 XXXXXXXXSTAFCXXXXXXXXXXXXXQVNGLLQHTDSPYIRALGFMYIRYTQPPADLXXX 603
                   STAFC             Q++GLL+H DSPYIRA+GF+Y+RY   P  L   
Sbjct: 61  ------GPSTAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRAIGFLYLRYVADPKILWTW 114

Query: 604 XXXXXXXXXXXXPRAGGGASTTIGALVRQMLVKLDWFXTLFPRIPVPI 747
                       P    G  TT+G  VR +++   +F +L PR+P+P+
Sbjct: 115 YEPYLKDDEEFSP-GSNGRMTTMGVYVRDLILGQYYFDSLLPRVPLPV 161


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 79.8 bits (188), Expect = 2e-15
 Identities = 64/200 (32%), Positives = 87/200 (43%), Gaps = 32/200 (16%)
 Frame = +1

Query: 244 LNPLILANIQGSSYFKVHLFKLKTYHEVVDEIYYQVKHLEPWERGSRKTSXXXXXXXXXX 423
           +  ++  NI  S YFK  L++LKTYHEV+DEIY QV H+EPW  G+ +            
Sbjct: 14  MEKVLSVNILSSDYFK-ELYRLKTYHEVIDEIYNQVDHVEPWMTGNCR------------ 60

Query: 424 XXXXXXXXSTAFCXXXXXXXXXXXXXQVNGLLQHTDSPYIRA------------------ 549
                   S+AFC             Q++GLL+H DSPYIRA                  
Sbjct: 61  ------GPSSAFCLLYKFFTMKLTVKQMHGLLKHPDSPYIRADGLLRAECNVEDLLNIVD 114

Query: 550 -------LGFMYIRYTQPPADLXXXXXXXXXXXXXXXPRAGGGASTTIGALVRQMLV--- 699
                  +GF+Y+RY   P  L               P    G  TT+G  VR +L+   
Sbjct: 115 FAKSLHYVGFLYLRYVAEPKTLWSWYEPYIKDDEEFSP-GSNGKMTTMGVYVRDLLLGQV 173

Query: 700 ----KLDWFXTLFPRIPVPI 747
               K  +F +L PR+P+PI
Sbjct: 174 HSEQKRYYFDSLLPRVPLPI 193


>03_03_0070 - 14256143-14257492
          Length = 449

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/47 (34%), Positives = 21/47 (44%)
 Frame = -2

Query: 472 CRGDRKQWTQFHQHPHLVRRHTCRSGLMSCGYHAPTAQGVSPDNIFR 332
           CR   K W     HP+ +R H  RS +++      TA    PD  FR
Sbjct: 43  CRAVCKAWRSRTSHPYFLRAHAARSRIIAAAVVDTTA---IPDGEFR 86


>02_04_0496 +
           23446039-23446964,23452755-23452845,23452946-23452996,
           23453080-23453206,23453390-23453425,23453443-23453473,
           23453488-23453576,23454341-23454462,23455601-23455778,
           23458343-23458470,23458592-23458658,23459167-23459272,
           23459365-23459473,23459965-23460084,23460187-23460220,
           23460471-23460547,23460640-23460692,23460847-23460898,
           23461270-23461767
          Length = 964

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -2

Query: 472 CRGDRKQWTQFHQHPHLVRRHTCRSGLM 389
           CR    QW + HQHP+  R    R  ++
Sbjct: 138 CRPGDNQWVKLHQHPYQYRNPAHRDAII 165


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,781,222
Number of Sequences: 37544
Number of extensions: 322317
Number of successful extensions: 709
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)