Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_H11
(792 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 29 0.58
SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps90... 29 0.76
SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyce... 28 1.3
SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory sub... 28 1.3
SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr... 28 1.3
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 27 2.3
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc... 27 3.1
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 26 5.4
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 26 7.1
SPBC26H8.09c |snf59||SWI/SNF complex subunit Snf59|Schizosacchar... 26 7.1
SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination ... 25 9.4
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 25 9.4
>SPAC4H3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 345
Score = 29.5 bits (63), Expect = 0.58
Identities = 20/49 (40%), Positives = 25/49 (51%)
Frame = +3
Query: 201 LENSSACGEXAPVILKNFNSERQAVDSNTDKDEDTDGISIISDCEQDTA 347
LE SS E A L + A S+ D D+DTDGI +D E DT+
Sbjct: 279 LEKSSTAIENAQNRLAEMTAHL-AESSDYDNDDDTDGIINETDYELDTS 326
>SPBC4F6.10 |vps901|vps9a|guanyl-nucleotide exchange factor Vps901
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 537
Score = 29.1 bits (62), Expect = 0.76
Identities = 24/91 (26%), Positives = 36/91 (39%)
Frame = +3
Query: 255 NSERQAVDSNTDKDEDTDGISIISDCEQDTAFEPNNDQQQFLSESELKDFTNQYISITPI 434
N E+ +D N DE + + C+ N+DQQ ++D NQY
Sbjct: 26 NEEKPLIDLNDSLDEQRNAYN--EHCK-------NHDQQPSQQVRNMEDEANQY-----E 71
Query: 435 STNSSDHDEAKHEYDFLGDNNKHKTYVHRRN 527
T+SS E +E L N++ H N
Sbjct: 72 QTDSSSDQEVMNEKQSLDKENRNDNIPHENN 102
>SPAC6B12.13 |||protein phosphatase inhibitor |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 104
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 252 FNSERQAVDSNTDKDEDTDGISIISDCEQDTAFE 353
F+ +R+ +S++D D D+D S S C A+E
Sbjct: 69 FHKQRKFDESSSDSDSDSDSDSSCSSCCSRNAYE 102
>SPCC663.01c |ekc1|SPCC777.16c|protein phosphatase regulatory
subunit Ekc1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 838
Score = 28.3 bits (60), Expect = 1.3
Identities = 25/97 (25%), Positives = 46/97 (47%)
Frame = +3
Query: 279 SNTDKDEDTDGISIISDCEQDTAFEPNNDQQQFLSESELKDFTNQYISITPISTNSSDHD 458
S+ D+D+ D + + + +FE ND S+ + +D QY+S IS N+++
Sbjct: 712 SSNDEDDGNDEDPLSREMSRRLSFESAND-----SDQDNRDHFAQYMS-QQISDNNANQF 765
Query: 459 EAKHEYDFLGDNNKHKTYVHRRNKRLSTVLNIIMLGS 569
+ E D D+++ +V R N+ N + GS
Sbjct: 766 SSSDEDD--DDDDEVVEWVSRGNENKYPRSNFFINGS 800
>SPBP8B7.04 |mug45||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 28.3 bits (60), Expect = 1.3
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 645 VSVNKILSNLYKLQEENAYLRNKLXELTGTLNLQKKPVLSKSAIHHE 785
++ NK SNLYK+ E R+ T L L+ KP+ + + +E
Sbjct: 304 LNYNKTFSNLYKVLSETEKTRDSKVWFTFRLVLKTKPLYASESEFYE 350
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/49 (24%), Positives = 22/49 (44%)
Frame = +3
Query: 480 FLGDNNKHKTYVHRRNKRLSTVLNIIMLGSVITAAGVAIGHMWGAKNEC 626
F+ D N YVH + +L ++++ + AAG + +G C
Sbjct: 1653 FITDPNNPSPYVHDTKTGTNPILRLVIISLIPIAAGFGMSGFFGGMACC 1701
>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/64 (20%), Positives = 33/64 (51%)
Frame = +3
Query: 264 RQAVDSNTDKDEDTDGISIISDCEQDTAFEPNNDQQQFLSESELKDFTNQYISITPISTN 443
+QA+ + + +E+ + + + + C QD +F+ ++ + S L +Y + P+ +
Sbjct: 15 KQAITTGSISEEEKESLEVAAQCIQD-SFKIKPEEIKPKSGDRLVAAFEEYEKLHPVEED 73
Query: 444 SSDH 455
S+ H
Sbjct: 74 STAH 77
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 26.2 bits (55), Expect = 5.4
Identities = 20/86 (23%), Positives = 40/86 (46%), Gaps = 8/86 (9%)
Frame = +3
Query: 246 KNFNSERQAVDSNTDKDEDTDGISIISDCEQDTAFEPNNDQQQFLSESELKDFT------ 407
K N+ + A + K+E+T + ++ ++D E ++++ + +S E K
Sbjct: 1051 KKLNNAKDAHEMQESKNEETFVRNDVA--QEDNFIELSSNEVRNVSNDEHKHTLFHGQSL 1108
Query: 408 --NQYISITPISTNSSDHDEAKHEYD 479
N I++TP S +H E +YD
Sbjct: 1109 THNNLIAVTPPSRTGVEHKEENKKYD 1134
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Frame = +3
Query: 192 WTLLENSSACGEXAPVILKNFNSE 263
WTL + + P +L+NFNS+
Sbjct: 1445 WTLQKGIDLIADITPTLLENFNSQ 1468
>SPBC26H8.09c |snf59||SWI/SNF complex subunit
Snf59|Schizosaccharomyces pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = +3
Query: 321 ISDCEQDTAFEPNNDQQQFLSESELKDFTNQYISITPISTNSSDHDE 461
+ D EP D+ LS+ E+ D Q S+TPI+ D D+
Sbjct: 266 LKDTAPSKCKEPPVDEA--LSKKEISDDIAQITSVTPITEKIEDKDK 310
>SPBC28F2.07 |sfr1|dds20, mug13|Swi five-dependent recombination
repair protein Sfr1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 299
Score = 25.4 bits (53), Expect = 9.4
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +3
Query: 315 SIISDCEQDTAFEPNNDQQQFLSESELKDFTNQY-ISITPISTNSSDHDE 461
+I S+ ++ + D + LSES+L+D Q I P NS +H +
Sbjct: 4 TINSELNENATSQCKEDLKVSLSESDLRDSQGQLGIENPPKCNNSGNHSD 53
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 25.4 bits (53), Expect = 9.4
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = -3
Query: 763 LNTGFFCKFKVPVNSXSLFLKYAFSSCNLYRLDRILFTDTG 641
+N G+ +FK+P N LF S + ++ ILF G
Sbjct: 1988 MNPGYLGRFKLPSNLKKLFRPIWMGSPDNKKICEILFLSFG 2028
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,682,321
Number of Sequences: 5004
Number of extensions: 49290
Number of successful extensions: 170
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 170
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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