Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H11
         (792 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       23   4.3  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.9  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   9.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 10/30 (33%), Positives = 19/30 (63%)
 Frame = +3

Query: 336 QDTAFEPNNDQQQFLSESELKDFTNQYISI 425
           QD++ E  ++Q++F   S LKD  +Q+  +
Sbjct: 108 QDSSSEHASNQERFGYFSSLKDHQHQFAEL 137


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 417 ISITPISTNSSDHDEAKHEYDFLGDNNKHKTYVHRRNKRLSTVLNII 557
           +S+  +S  S D    K+E +FL     +   +   N+     LN I
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAI 136


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 417 ISITPISTNSSDHDEAKHEYDFLGDNNKHKTYVHRRNKRLSTVLNII 557
           +S+  +S  S D    K+E +FL     +   +   N+     LN I
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAI 136


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 417 ISITPISTNSSDHDEAKHEYDFLGDNNKHKTYVHRRNKRLSTVLNII 557
           +S+  +S  S D    K+E +FL     +   +   N+     LN I
Sbjct: 141 VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAI 187


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 12/47 (25%), Positives = 20/47 (42%)
 Frame = +3

Query: 417 ISITPISTNSSDHDEAKHEYDFLGDNNKHKTYVHRRNKRLSTVLNII 557
           +S+  +S  S D    K+E +FL     +   +   N+     LN I
Sbjct: 90  VSVLLLSLASPDESSLKYEVEFLLQQQWYDPRLRYSNRSQYEFLNAI 136


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = -1

Query: 489 HLKNHIHVLLHHDH 448
           H  +HIH   HH H
Sbjct: 421 HGHSHIHATPHHHH 434


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,778
Number of Sequences: 438
Number of extensions: 3052
Number of successful extensions: 13
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)