Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H10
         (784 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1405 - 33305948-33309676,33309749-33310468,33310533-333114...    31   1.4  
03_05_0939 - 28983091-28983747,28983805-28983913,28984245-289848...    30   2.4  
01_05_0279 + 20318440-20318688,20318785-20318931,20319449-203196...    28   9.6  

>04_04_1405 -
           33305948-33309676,33309749-33310468,33310533-33311439,
           33334405-33334484
          Length = 1811

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 22/74 (29%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = +2

Query: 212 RVHVNGGEYIGFVREDGTFVVHNLPSGSYVVEIVHPDYMYEPVRVEINSKGKYRARKVNY 391
           +V     E   F+RE+    V  L    ++ E+VHP+++  PV V   + GK R   ++Y
Sbjct: 615 KVRRQAPERQAFIREE----VARLLEAGFIREVVHPEWLANPVVVP-KANGKLR-MCIDY 668

Query: 392 VQTSQVI-QVPYPL 430
              ++   + PYPL
Sbjct: 669 TDLNKACPKDPYPL 682


>03_05_0939 -
           28983091-28983747,28983805-28983913,28984245-28984801,
           28985197-28985414,28985508-28985613,28986352-28986429
          Length = 574

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 138 QSDMLSKAVCFLLKIPTTAIGNWTPAFTLT 227
           QS    +++C  L++ TTA+GN+  AF LT
Sbjct: 490 QSPDAMRSLCSALQLVTTALGNYLSAFILT 519


>01_05_0279 +
           20318440-20318688,20318785-20318931,20319449-20319611,
           20319770-20319887,20320607-20320676,20320774-20320854,
           20320924-20320959,20321129-20321149,20321586-20321642,
           20321716-20321827,20321905-20322178,20322454-20322556,
           20323244-20323459,20324615-20324665,20325339-20327963
          Length = 1440

 Score = 27.9 bits (59), Expect = 9.6
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -1

Query: 358 RIDFDTHGFVHVVWVYDFDDV 296
           ++DFD  GFV V   Y FDD+
Sbjct: 748 KLDFDVSGFVTVTNSYQFDDL 768


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,908,440
Number of Sequences: 37544
Number of extensions: 410166
Number of successful extensions: 1083
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1083
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2103658836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)