Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H10
         (784 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.79 
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    23   4.2  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    23   4.2  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   7.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   7.4  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   7.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 25.0 bits (52), Expect = 0.79
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 509 MVVMMVLPLFLIMILPKMMNDPETKEDL 592
           +V + VLP FL++  PK   D E +E++
Sbjct: 339 VVFIQVLPRFLLIERPKKDEDEEEEEEV 366


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 624 MCRKCQKCLLKSSIGV 671
           M RKCQ+C LK  + V
Sbjct: 235 MRRKCQECRLKKCLTV 250


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 22.6 bits (46), Expect = 4.2
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 624 MCRKCQKCLLKSSIGV 671
           M RKCQ+C LK  + V
Sbjct: 32  MRRKCQECRLKKCLTV 47


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +2

Query: 449 KFRYFQVREQWRLTDFLF 502
           K   FQV+ QW+  D+ F
Sbjct: 28  KANIFQVKYQWKYFDYNF 45


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 11/30 (36%), Positives = 15/30 (50%)
 Frame = -2

Query: 141 IAASVRXLAQXTLPSTNXEMEXMMIFGCMF 52
           +AAS   LA    PS   E+    I+ C+F
Sbjct: 404 VAASGPGLAFLVYPSAVLELPGSSIWSCLF 433


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 7.4
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 345 SKSILKANTELEKSITFKLHK 407
           SKS +KAN++ E S + KL +
Sbjct: 561 SKSFIKANSQTEVSNSKKLDR 581


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,974
Number of Sequences: 438
Number of extensions: 4242
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)