Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H06
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock prote...    22   4.6  
EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    22   4.6  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    22   6.1  

>EF633444-1|ABR32189.1|  721|Tribolium castaneum heat shock protein
           90 protein.
          Length = 721

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = -3

Query: 434 GKD*YEDTEN*SKRPK---RQKHT-----LKTKEGKFRQSRSISNRNRHSYFSSLRRAPV 279
           G+D  EDT+   K+ K   ++K+T      KTK    R +  IS      ++ SL     
Sbjct: 251 GEDEDEDTKKEDKKKKKTIKEKYTEDEELNKTKPIWTRNADDISQEEYGEFYKSLTNDWE 310

Query: 278 IYMAVKGF 255
            ++AVK F
Sbjct: 311 DHLAVKHF 318


>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 509 VTYTAVKALRT*QMCFLNV*QRKKYVWFLYIQKVLEY 619
           V+ T  K LRT    F N  + ++Y W    QK ++Y
Sbjct: 20  VSSTRTKYLRTNFPNFYNDFEVQRYTWKCENQKCVKY 56


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +2

Query: 602 QKVLEYFSKMSNRLH 646
           QKV++YF KM  + H
Sbjct: 62  QKVMDYFIKMVKQKH 76


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,322
Number of Sequences: 336
Number of extensions: 3196
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)