Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H06
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    27   2.2  
SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces...    27   3.9  
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    27   3.9  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    26   5.1  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    26   6.7  

>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 686 FNNYIMFGRKTTRRHPRFL 742
           F  Y+ F R+  RRHP+FL
Sbjct: 85  FAYYVYFDREEARRHPKFL 103


>SPBC776.01 |rpl29||60S ribosomal protein L29|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 61

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/27 (37%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
 Frame = -3

Query: 398 KRPKRQKH-TLKTKEGKFRQSRSISNR 321
           KRP++ ++ +LK ++ KFR+++  +NR
Sbjct: 22  KRPQKHRYDSLKYRDAKFRRNQKFANR 48


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
 Frame = -1

Query: 271 WQSKGLSIIEKKVQFRRRKQRLYKTLNXCVQ-LKTXFXDASAPTWP 137
           WQ+ G+S   K   FR +KQ   KT+  C++ LK      +   WP
Sbjct: 77  WQNLGISRYTKDCDFRSKKQ---KTIMYCLKGLKHLVDSDTWRRWP 119


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 353 KFRQSRSISNRNRHSYFSSLRRAPVIY 273
           KFR   SIS+ N++   S L+  P++Y
Sbjct: 121 KFRYLNSISDLNKYIPLSHLKLPPIVY 147


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 24/98 (24%), Positives = 49/98 (50%)
 Frame = -1

Query: 502 PTWRTKVFMSISVTKASEYLVVLGKTNTKILRINLRDLKDKNIH*KQKKANLGNPGALVT 323
           P  RTKV + + + K  +  +   +   +I  + +R L+D++ H ++    L +      
Sbjct: 371 PYCRTKV-LHVFI-KIFDLPIKYPRKRQEIAELVIRCLQDRSSHVRRNAIKLFSKLLTTH 428

Query: 322 EIDIVTSALCGGHR*SIWQSKGLSIIEKKVQFRRRKQR 209
              ++ + L   +   IW+ KGLSIIE+++   + KQ+
Sbjct: 429 PFSVMHNGLLTRN---IWE-KGLSIIEEQLNSLQPKQQ 462


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,894,961
Number of Sequences: 5004
Number of extensions: 54878
Number of successful extensions: 123
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)