Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H06
         (763 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0404 + 3200787-3200898,3201016-3201091,3201442-3201544,320...    29   4.0  
11_04_0444 + 17816207-17817436                                         29   4.0  
07_03_0999 - 23216665-23217419,23217626-23217956                       29   4.0  
06_03_0334 - 19660526-19661755                                         29   4.0  
01_05_0634 + 23843152-23843272,23843441-23843628,23843876-238442...    28   9.3  

>12_01_0404 +
           3200787-3200898,3201016-3201091,3201442-3201544,
           3202109-3202160,3202239-3202333,3202703-3202768,
           3202910-3203419,3203598-3203756,3204022-3204321,
           3204867-3205193,3205548-3205754,3205978-3206076,
           3206193-3206251,3206294-3206639
          Length = 836

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 19/56 (33%), Positives = 27/56 (48%)
 Frame = +1

Query: 508 SDLHSSQSVKNLTNVFSECLTTEKICVVFVYSESSGILFKNVKQTSLRVLVSVYRE 675
           SD     SV N  +   E L+ +KI      SE   ++ K  K  SLR L++ YR+
Sbjct: 170 SDEDEMDSVDNDADSSDENLSNDKILTRKTISEWCQLVAKEPKAPSLRSLLNAYRD 225


>11_04_0444 + 17816207-17817436
          Length = 409

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 446 SSSSGKD*YEDTEN*SKRPKRQKHTLKTKEGK 351
           +SSS +D  E+TE   KRP+ QK   + ++GK
Sbjct: 305 TSSSNQDTEEETERKEKRPEGQKAAKQRQKGK 336


>07_03_0999 - 23216665-23217419,23217626-23217956
          Length = 361

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 446 SSSSGKD*YEDTEN*SKRPKRQKHTLKTKEGK 351
           +SSS +D  E+TE   KRP+ QK   + ++GK
Sbjct: 236 TSSSNQDTEEETERKEKRPEGQKAAKQRQKGK 267


>06_03_0334 - 19660526-19661755
          Length = 409

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = -3

Query: 446 SSSSGKD*YEDTEN*SKRPKRQKHTLKTKEGK 351
           +SSS +D  E+TE   KRP+ QK   + ++GK
Sbjct: 305 TSSSNQDTEEETERKEKRPEGQKAAKQRQKGK 336


>01_05_0634 +
           23843152-23843272,23843441-23843628,23843876-23844205,
           23844319-23844565,23844591-23844668,23844740-23845024,
           23845139-23845225,23845365-23845415,23845625-23845761,
           23845853-23846437
          Length = 702

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/71 (26%), Positives = 27/71 (38%)
 Frame = -1

Query: 496 WRTKVFMSISVTKASEYLVVLGKTNTKILRINLRDLKDKNIH*KQKKANLGNPGALVTEI 317
           WR K      + K  E    L  T  KIL   + +L+ K +H       LG  G  V   
Sbjct: 491 WRKKKLQKNGLKKFLEKRHSL-HTKRKILGKRISELEQKTVHDASSNEALGQLGETVNAK 549

Query: 316 DIVTSALCGGH 284
           + +   LC  +
Sbjct: 550 ECIERKLCSSY 560


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,913,412
Number of Sequences: 37544
Number of extensions: 316309
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 590
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)