Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H03
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu...    27   2.0  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   4.7  
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    26   4.7  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    26   6.2  
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    25   8.2  
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    25   8.2  

>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
           Cct5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 546

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +2

Query: 614 PQAHIQLTHDGQYVVDTPEVQHARASHLAQ 703
           P   I +T+DG  ++D  EV+H  A  L Q
Sbjct: 66  PDGEITVTNDGATILDQMEVEHQIAKLLVQ 95


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -2

Query: 136  VVNFNFSEISNELAGRCWIASTRQEIF 56
            + NFN+ +I N LAGR +   T+  +F
Sbjct: 1927 ISNFNYLQIVNTLAGRTYNDLTQYPVF 1953


>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +2

Query: 23  WKVVANTRCLGENFLASTGYPA 88
           WK+  ++RCLG   L S G PA
Sbjct: 135 WKMNQSSRCLGNLDLPSLGIPA 156


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 543 PSRTPQLPSPTVPVTLLVTANGL 611
           P RTP LP  T+P T  V+A GL
Sbjct: 15  PGRTPHLPPLTIPHT--VSAEGL 35


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/56 (28%), Positives = 24/56 (42%)
 Frame = +2

Query: 83  PAAPS*FV*DL*KIKIYNKLIMQSLVILAATLCLAQASYYLGAPAPIQLSPDGKYV 250
           P  P   V  L  + +YNK+I     +   T+ +   S  +G P    L+ DG  V
Sbjct: 151 PCTPLAIVKILEYLGVYNKIINYGNRLYGKTITIVNRSEIVGRPLAALLANDGAKV 206


>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 531 DPTHPSRTPQLPSPTVPVTLLVTAN 605
           DP++P+ T   P P  P+  L+  N
Sbjct: 143 DPSNPNATSSSPPPLTPILELIKQN 167


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,159,783
Number of Sequences: 5004
Number of extensions: 31359
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)