Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_H03
         (716 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-2840|AAF55794.1|  381|Drosophila melanogaster CG5494-PA...    36   0.055
AY070660-1|AAL48131.1|  200|Drosophila melanogaster RH04437p pro...    35   0.096
AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA...    30   2.7  
AJ131564-1|CAB39165.1|  313|Drosophila melanogaster nucleolar pr...    29   6.3  
AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-P...    29   6.3  

>AE014297-2840|AAF55794.1|  381|Drosophila melanogaster CG5494-PA
           protein.
          Length = 381

 Score = 35.9 bits (79), Expect = 0.055
 Identities = 18/34 (52%), Positives = 22/34 (64%)
 Frame = +2

Query: 611 GPQAHIQLTHDGQYVVDTPEVQHARASHLAQYHA 712
           GP  HI +   G   VDTPEVQHA+A+H A + A
Sbjct: 118 GP-IHIPVLTHGGVPVDTPEVQHAKAAHAAAHAA 150



 Score = 35.9 bits (79), Expect = 0.055
 Identities = 17/32 (53%), Positives = 21/32 (65%)
 Frame = +2

Query: 611 GPQAHIQLTHDGQYVVDTPEVQHARASHLAQY 706
           G  AH+ LTH G   VDTP+VQ A+A H A +
Sbjct: 173 GQAAHVPLTHGG-VPVDTPDVQAAKAEHYAAH 203



 Score = 35.1 bits (77), Expect = 0.096
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 623 HIQLTHDGQYVVDTPEVQHARASHLA 700
           H+ + H+G   VDTPEVQHA+A+H A
Sbjct: 252 HVPVIHNG-VPVDTPEVQHAKAAHYA 276



 Score = 30.7 bits (66), Expect = 2.1
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 656 VDTPEVQHARASHLAQYHA 712
           V+TPEVQHA+A+H A + A
Sbjct: 218 VETPEVQHAKAAHFAAHAA 236



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +2

Query: 611 GPQAHIQLTHDGQYVVDTPEVQHARASHL 697
           GP  HI + H+G   V+  EVQHARA+HL
Sbjct: 319 GP-IHIPVIHNG-VPVEPAEVQHARAAHL 345


>AY070660-1|AAL48131.1|  200|Drosophila melanogaster RH04437p
           protein.
          Length = 200

 Score = 35.1 bits (77), Expect = 0.096
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +2

Query: 623 HIQLTHDGQYVVDTPEVQHARASHLA 700
           H+ + H+G   VDTPEVQHA+A+H A
Sbjct: 71  HVPVIHNG-VPVDTPEVQHAKAAHYA 95



 Score = 30.7 bits (66), Expect = 2.1
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 656 VDTPEVQHARASHLAQYHA 712
           V+TPEVQHA+A+H A + A
Sbjct: 37  VETPEVQHAKAAHFAAHAA 55



 Score = 30.3 bits (65), Expect = 2.7
 Identities = 16/29 (55%), Positives = 20/29 (68%)
 Frame = +2

Query: 611 GPQAHIQLTHDGQYVVDTPEVQHARASHL 697
           GP  HI + H+G   V+  EVQHARA+HL
Sbjct: 138 GP-IHIPVIHNG-VPVEPAEVQHARAAHL 164


>AE014297-2568|AAF55584.1|  950|Drosophila melanogaster CG7709-PA
           protein.
          Length = 950

 Score = 30.3 bits (65), Expect = 2.7
 Identities = 29/82 (35%), Positives = 34/82 (41%), Gaps = 4/82 (4%)
 Frame = +2

Query: 185 AQASYYLGAPAPIQLSPDGKYVLDTPEVXXXXXXXXXXXXXXSTSHGAWSPGYGGYASDA 364
           A  S   GAPAP    P  KY    P+               S+S+GA +P    Y + A
Sbjct: 254 APPSQSYGAPAP----PSSKY--GPPKSAPSSSYGAPRPAAPSSSYGAPAPPSSSYGAPA 307

Query: 365 ----HYGAPAAGLYKYGPAPLA 418
                YGAPAA    YG AP A
Sbjct: 308 APSSSYGAPAAPSSSYG-APAA 328


>AJ131564-1|CAB39165.1|  313|Drosophila melanogaster nucleolar
           protein, putative protein.
          Length = 313

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +2

Query: 338 GYGGY-ASDAHYGAPAAGLYKYG 403
           GYGGY  +  +YG  A+G Y YG
Sbjct: 247 GYGGYYGAGGYYGGAASGGYSYG 269


>AE014298-1554|AAF48000.3| 3539|Drosophila melanogaster CG11122-PA
            protein.
          Length = 3539

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +3

Query: 534  PTHPSRTPQ-LPSPTVPVTLLVTANGLVPR 620
            P  P R  Q LP P VP+ L+  AN L P+
Sbjct: 1512 PVPPPRMQQELPMPLVPLPLVTNANALAPQ 1541


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,992,091
Number of Sequences: 53049
Number of extensions: 402944
Number of successful extensions: 1546
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)