Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G24
         (767 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...   169   3e-43
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    29   0.55 
SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces...    27   3.9  
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|...    26   5.2  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.8  
SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1 |Schiz...    25   9.0  
SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase |Schizosa...    25   9.0  

>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score =  169 bits (412), Expect = 3e-43
 Identities = 76/174 (43%), Positives = 116/174 (66%), Gaps = 1/174 (0%)
 Frame = +3

Query: 132 KFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLEIMV 311
           +F+ +E I G   +KSS+Q+GI+A+L++ YP+L   ID+++PKK     +KC D L  + 
Sbjct: 7   RFNSREDIKGTTPIKSSIQRGIKAKLVQAYPNLKQVIDELIPKKSQLTQIKCEDRL-FLY 65

Query: 312 NSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAX 491
              G+++ F+H +GP +P+L+L+HK P      +VD+GAI+F+LSGANIM PGL S    
Sbjct: 66  TLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVDRGAIKFLLSGANIMIPGLVSKGGN 125

Query: 492 MSPS-DKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCHYLNDGLW 650
           +    +K Q V + AEGKE    IG+T +S +++ + NKG+G+EN HYL D LW
Sbjct: 126 LPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEMKETNKGIGIENVHYLGDNLW 179


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 12/23 (52%), Positives = 17/23 (73%)
 Frame = +2

Query: 347 RGSLDANLKTTAQISVLRSDAAS 415
           RGS+D+NLKT   + +LR D +S
Sbjct: 62  RGSIDSNLKTNYVLELLRKDVSS 84


>SPCC74.04 |||amino acid permease, unknown 15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 557

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +1

Query: 226 IWTTTLTRSYPRRIRLGLSNVTITS 300
           +W T L++  P+R  LG+ ++TI S
Sbjct: 333 MWATYLSQCLPKRAALGILSLTIVS 357


>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 809

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 397 SFRCSKSIKVQFASCSAARTSCV 465
           +FR +K+  +QF S S+  TSC+
Sbjct: 6   NFRATKNFYLQFVSVSSRDTSCI 28


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/52 (23%), Positives = 29/52 (55%)
 Frame = +3

Query: 129  KKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVK 284
            +K + K ++  ++   ++++  IRA+LL    + D ++ Q +  +   R+VK
Sbjct: 1126 QKNESKAALEQMKNYVTNIENNIRAKLLPSAANDDAWLSQNVVDESVTRVVK 1177


>SPAC821.11 |pro1||gamma-glutamyl phosphate reductase Pro1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 451

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/53 (26%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
 Frame = +3

Query: 228 LDNYIDQILPKKDT--FRIVKCHDHLEIMVNSAGDLLFFRHREGPWMPTLKLL 380
           LD YID ++P+  T   R +K +  + ++ ++AG    + H +       KL+
Sbjct: 194 LDEYIDLVIPRGSTNLVRHIKDNTKIPVLGHAAGLCSMYVHEDADMELASKLV 246


>SPAC20H4.04 |mfh2||ATP-dependent 3' to 5' DNA helicase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 17/76 (22%), Positives = 27/76 (35%)
 Frame = +3

Query: 384 KYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIG 563
           K  FF+  Q +       +L   +I+C     A+         QV+  +     H   +G
Sbjct: 204 KRVFFMTPQTLQNDLKEHLLDAKSIICLIFDEAHRATGNHSYAQVMRAVLRSNSHFRVLG 263

Query: 564 ITTLSTEDIAKVNKGV 611
           +T       A V K V
Sbjct: 264 LTATPGSSTASVQKVV 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,898,650
Number of Sequences: 5004
Number of extensions: 56931
Number of successful extensions: 142
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 369323696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)