Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G24
(767 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0032 - 11795368-11795385,11795607-11795670,11795979-117960... 155 3e-38
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 46 3e-05
06_03_0369 + 19975703-19975931,19976197-19976239,19976799-199768... 31 1.0
10_06_0005 + 9459181-9459409,9459672-9459714,9460274-9460360,946... 31 1.3
04_03_0232 - 13049649-13052807 29 3.1
03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319 29 4.1
05_03_0095 - 8349971-8350171,8350659-8351303 28 7.1
04_03_0811 - 19909128-19912214 28 7.1
04_01_0085 - 932461-932464,932656-933002,933387-935041,935084-93... 28 7.1
08_01_1078 + 11045555-11045673,11045940-11045991,11046230-110462... 28 9.4
05_01_0474 - 3797926-3798609 28 9.4
>01_03_0032 -
11795368-11795385,11795607-11795670,11795979-11796046,
11796319-11796455,11796722-11796783,11796889-11796956,
11797045-11797126,11798160-11798269
Length = 202
Score = 155 bits (377), Expect = 3e-38
Identities = 84/173 (48%), Positives = 113/173 (65%), Gaps = 2/173 (1%)
Frame = +3
Query: 147 ESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLE-IMVNSAG 323
E IS Q+K+SVQ+ IR + + YP L+ +D +LPKK +VKC +HL ++VN+
Sbjct: 41 EDISAQNQVKASVQRKIRQSIADEYPGLEPLLDDLLPKKSPMIVVKCQNHLNLVVVNNVP 100
Query: 324 DLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAXMSPS 503
LFF R+ P ++ K+ QVD+GAI+FVLSGANIMCPGLTS +
Sbjct: 101 --LFFNIRDDP-----DIMKKF-------QVDRGAIKFVLSGANIMCPGLTSPGGSLDVE 146
Query: 504 DKGQV-VAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCHYLNDGLWXMK 659
+ + VAIMAEGK+HAL IG T +S +DI +NKG+GV+N HYLNDGLW M+
Sbjct: 147 VEEETPVAIMAEGKQHALAIGYTKMSAKDIKTINKGIGVDNMHYLNDGLWKME 199
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 46.0 bits (104), Expect = 3e-05
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 14/190 (7%)
Frame = +3
Query: 123 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHL-DNYIDQILPKKDTFRIVKCHDHL 299
MFKK + + +Q+L + +K +R E +P D +D ILP K + K + +
Sbjct: 1 MFKKHVD---VKALQRLSGADKKKLRRTAKERFPQASDADLDAILPPKVEVTVAKYPNRV 57
Query: 300 EIM-VNSAGDLLFFRHREGPWM-PT----------LKLLHKYPFFVPMQQVDKGAI-RFV 440
+ + +LF G + PT + L K P +P + G + RF+
Sbjct: 58 LVYGIEGEFPMLFDIDGRGHELFPTEHSLTGENIAVYALWKVPDLLPAFTLKGGEVSRFI 117
Query: 441 LSGANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVE 620
L GA++M PG++ + GQ ++ G + +G TT+S+ + K G +
Sbjct: 118 LGGADLMFPGISIPPEGLPSFQPGQPWSVKVPGNPAPIAVGATTMSSNEALKA--GDSAD 175
Query: 621 NCHYLNDGLW 650
+ N+G +
Sbjct: 176 GRYVPNEGFY 185
>06_03_0369 +
19975703-19975931,19976197-19976239,19976799-19976826,
19976977-19977114
Length = 145
Score = 31.1 bits (67), Expect = 1.0
Identities = 17/44 (38%), Positives = 24/44 (54%)
Frame = -1
Query: 536 LGHDGDDLTLVAWRHXRVGRRQPRTHDVRAAEHEANCTFIDLLH 405
L H G D+ L+ H +G+R+ R + AA H C +DLLH
Sbjct: 27 LSHPGTDVHLLKVAHDGIGQRRMRKEE--AATHGGGC--VDLLH 66
>10_06_0005 +
9459181-9459409,9459672-9459714,9460274-9460360,
9460669-9460810
Length = 166
Score = 30.7 bits (66), Expect = 1.3
Identities = 17/44 (38%), Positives = 23/44 (52%)
Frame = -1
Query: 536 LGHDGDDLTLVAWRHXRVGRRQPRTHDVRAAEHEANCTFIDLLH 405
L H G D+ L+ H +G+R R + AA H C +DLLH
Sbjct: 27 LSHPGTDVHLLKVAHDGIGQRHMRKEE--AATHGGGC--VDLLH 66
>04_03_0232 - 13049649-13052807
Length = 1052
Score = 29.5 bits (63), Expect = 3.1
Identities = 15/57 (26%), Positives = 27/57 (47%)
Frame = +3
Query: 42 DKSLWFSNNLLVLCFLVDR*LCYKYINMFKKFDEKESISGVQQLKSSVQKGIRARLL 212
D SLW + + +D L I +F ++DEK+ GV Q+ + ++ +L
Sbjct: 55 DCSLWQNTRAVQKAIAIDLNLPQHVIALFDQWDEKDDFDGVHQVARGPIQHVKEEIL 111
>03_01_0551 - 4113134-4113272,4113347-4113507,4113666-4114319
Length = 317
Score = 29.1 bits (62), Expect = 4.1
Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = +3
Query: 354 PWMPTLKLLHKYPFFVPMQ---QVDKGAIRFVLSGANIMCPGLTSANAXMSPSDKGQVVA 524
P +P L L+H + Q QV + RF + +++C G +S+++ PS+ Q A
Sbjct: 50 PRLPPLLLIHGFGPMATWQWRRQVGPFSRRFHIIVPDLLCFGASSSSSSPPPSESAQAAA 109
Query: 525 IM 530
++
Sbjct: 110 LL 111
>05_03_0095 - 8349971-8350171,8350659-8351303
Length = 281
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +3
Query: 396 FVPMQQVDKGAIRFVLSGANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTL 575
++P Q+D G +++ + + +TS+ + S Q + + A G A +G L
Sbjct: 113 YIPAGQIDGGRTQYMATSFTVPAFAVTSSATAAASSSPAQTITVPASGPSPA-AVGAVAL 171
Query: 576 STE 584
E
Sbjct: 172 QQE 174
>04_03_0811 - 19909128-19912214
Length = 1028
Score = 28.3 bits (60), Expect = 7.1
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +3
Query: 138 DEKESISGVQQLKSSVQKGIRARLLELYPH---LDNYIDQILPKKDTFRIV 281
D+K ISG V G A LL + H L N ID ILPK I+
Sbjct: 303 DQKWHISGKCITNKEVSSGTTALLLSHFSHKPSLLNLIDNILPKLSCLSIL 353
>04_01_0085 -
932461-932464,932656-933002,933387-935041,935084-935882,
936693-936707
Length = 939
Score = 28.3 bits (60), Expect = 7.1
Identities = 15/59 (25%), Positives = 28/59 (47%)
Frame = +3
Query: 42 DKSLWFSNNLLVLCFLVDR*LCYKYINMFKKFDEKESISGVQQLKSSVQKGIRARLLEL 218
D S+W S L + L + + +F + DE++ SGV+Q V + + +L +
Sbjct: 75 DCSVWQSKRALQKAIAQELQLPWSLMALFDQHDEEDDFSGVEQSARGVIQDVSQAILSI 133
>08_01_1078 +
11045555-11045673,11045940-11045991,11046230-11046279,
11047286-11047439,11048266-11048391
Length = 166
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = -1
Query: 194 ALLDRGLELLHARYAFLFIKL 132
AL+DRG E ++AR++ +F+KL
Sbjct: 50 ALVDRGSEFINARFSPVFLKL 70
>05_01_0474 - 3797926-3798609
Length = 227
Score = 27.9 bits (59), Expect = 9.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 534 RP*WRRLDPCRLETXSRWPTSAPDT 460
RP WRR PC + S W S+P +
Sbjct: 117 RP-WRRTSPCSTSSSSSWSYSSPSS 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,110,422
Number of Sequences: 37544
Number of extensions: 391828
Number of successful extensions: 903
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2063219900
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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