Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G24
(767 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF045640-2|AAM81123.1| 185|Caenorhabditis elegans Hypothetical ... 235 2e-62
U29535-14|AAK31455.3| 516|Caenorhabditis elegans Hypothetical p... 34 0.097
U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone... 29 3.6
U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone... 29 3.6
U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone... 28 6.4
U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone... 28 6.4
U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone... 28 6.4
AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical ... 28 6.4
AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear recep... 28 6.4
AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear recep... 28 6.4
Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical pr... 28 8.4
U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein. 28 8.4
AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical ... 28 8.4
>AF045640-2|AAM81123.1| 185|Caenorhabditis elegans Hypothetical
protein C11D2.7 protein.
Length = 185
Score = 235 bits (576), Expect = 2e-62
Identities = 102/179 (56%), Positives = 143/179 (79%), Gaps = 1/179 (0%)
Frame = +3
Query: 123 MFKKFDEKESISGVQQLKSSVQKGIRARLLELYPHLDNYIDQILPKKDTFRIVKCHDHLE 302
MFKKFDEKE ++G QLKSSVQKGIR +L+E +P+L+ ++++ILPKK+ F+++KC DH+E
Sbjct: 1 MFKKFDEKEDVTGATQLKSSVQKGIRKKLIENFPYLEPHLEEILPKKENFKVIKCKDHIE 60
Query: 303 IMVNSAGDLLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSA 482
++ + G + F + R ++PTL+ LHKYPF +P QQVDKGAI+F+L+G++IMCPGLTS
Sbjct: 61 LLADHLGVVRFVKTRNTDYIPTLRTLHKYPFILPHQQVDKGAIKFILNGSSIMCPGLTSP 120
Query: 483 NAXMSP-SDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCHYLNDGLWXM 656
A ++P K VVA+MAEGK+HAL IG+ ++S+E+I VNKG G+EN HYLNDGLW +
Sbjct: 121 GAKLTPLVPKDSVVAVMAEGKQHALAIGLMSMSSEEIQSVNKGNGIENLHYLNDGLWHL 179
>U29535-14|AAK31455.3| 516|Caenorhabditis elegans Hypothetical
protein C25H3.4 protein.
Length = 516
Score = 34.3 bits (75), Expect = 0.097
Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 7/115 (6%)
Frame = +3
Query: 327 LLFFRHREGPWMPTLKLLHKYPFFVPMQQVDKGAIRFVLSGANIMCPGLTSANAXMSPS- 503
+LF G PT+ + P+ + ++ +GA++M PG+ ++ P+
Sbjct: 65 MLFEFSENGNIYPTVYYMWNNQKTFPVLICHEPVFSYLENGADLMLPGVIRSSIFPFPTF 124
Query: 504 DKGQVVAIMAEGKEHALX-----IGITTLSTEDIAKVN-KGVGVENCHYLNDGLW 650
KG VAI E +G + +S+E++ KG GV+ H D LW
Sbjct: 125 RKGAPVAIAFYSSETETVSGPSAVGCSMMSSEEMVVCGFKGKGVQVLHVFRDQLW 179
>U23518-5|AAO38653.1| 448|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform a protein.
Length = 448
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 450 ANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCH 629
A + CPG+ AN PSDK Q + G+T LS E ++K + + +
Sbjct: 293 AKVGCPGVCYANGAYHPSDKRQ------QAFPDVNYRGVTELSVETVSKPLANINITDAE 346
Query: 630 YL 635
L
Sbjct: 347 ML 348
>U23518-4|ABB88231.1| 450|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform e protein.
Length = 450
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/62 (29%), Positives = 27/62 (43%)
Frame = +3
Query: 450 ANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCH 629
A + CPG+ AN PSDK Q + G+T LS E ++K + + +
Sbjct: 295 AKVGCPGVCYANGAYHPSDKRQ------QAFPDVNYRGVTELSVETVSKPLANINITDAE 348
Query: 630 YL 635
L
Sbjct: 349 ML 350
>U23518-8|AAO38654.1| 400|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform b protein.
Length = 400
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 450 ANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCH 629
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 247 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 298
Query: 630 YL 635
L
Sbjct: 299 ML 300
>U23518-7|AAO38655.1| 440|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform c protein.
Length = 440
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 450 ANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCH 629
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 287 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 338
Query: 630 YL 635
L
Sbjct: 339 ML 340
>U23518-6|AAD31548.2| 446|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 21, isoform d protein.
Length = 446
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 450 ANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCH 629
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 293 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 344
Query: 630 YL 635
L
Sbjct: 345 ML 346
>AF098985-1|AAC67419.2| 882|Caenorhabditis elegans Hypothetical
protein C08G5.1 protein.
Length = 882
Score = 28.3 bits (60), Expect = 6.4
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 3/85 (3%)
Frame = +3
Query: 189 KGIRARLLE---LYPHLDNYIDQILPKKDTFRIVKCHDHLEIMVNSAGDLLFFRHREGPW 359
KG++ LE L + + ++ +L K DTF +LE ++ + + F+H+
Sbjct: 197 KGLKESNLEWDKLESNFEEDLNSVLSKMDTFSEKPDKTNLERIITAITECTTFKHKLFES 256
Query: 360 MPTLKLLHKYPFFVPMQQVDKGAIR 434
+ KLL PM + +G ++
Sbjct: 257 LSKFKLLRGKDKAYPMLEKSRGFLK 281
>AF083234-1|AAD03692.1| 400|Caenorhabditis elegans nuclear receptor
NHR-21b protein.
Length = 400
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 450 ANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCH 629
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 247 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 298
Query: 630 YL 635
L
Sbjct: 299 ML 300
>AF083233-1|AAD03691.1| 458|Caenorhabditis elegans nuclear receptor
NHR-21a protein.
Length = 458
Score = 28.3 bits (60), Expect = 6.4
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = +3
Query: 450 ANIMCPGLTSANAXMSPSDKGQVVAIMAEGKEHALXIGITTLSTEDIAKVNKGVGVENCH 629
A + CPG+ AN PSDK Q + K G+T LS E ++K + + +
Sbjct: 305 AKVGCPGVCYANGAYHPSDKRQ--QAFPDVK------GVTELSVETVSKPLANINITDAE 356
Query: 630 YL 635
L
Sbjct: 357 ML 358
>Z81043-8|CAB02804.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 225 EGTVPKGEPLCPSGPRT*AVARPICFPFH 139
E T+P + PSG ARP CF +H
Sbjct: 24 ESTIPFSLEILPSGHPVLGCARPTCFGWH 52
>U61237-1|AAB17542.1| 550|Caenorhabditis elegans M89 protein.
Length = 550
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 225 EGTVPKGEPLCPSGPRT*AVARPICFPFH 139
E T+P + PSG ARP CF +H
Sbjct: 24 ESTIPFSLEILPSGHPVLGCARPTCFGWH 52
>AL023813-2|CAA19424.2| 550|Caenorhabditis elegans Hypothetical
protein C29F3.2 protein.
Length = 550
Score = 27.9 bits (59), Expect = 8.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = -3
Query: 225 EGTVPKGEPLCPSGPRT*AVARPICFPFH 139
E T+P + PSG ARP CF +H
Sbjct: 24 ESTIPFSLEILPSGHPVLGCARPTCFGWH 52
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,340,333
Number of Sequences: 27780
Number of extensions: 341513
Number of successful extensions: 886
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 820
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 885
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1840614650
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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