Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G23
(735 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26; B... 264 1e-69
UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30; P... 264 2e-69
UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181; ... 237 2e-61
UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861; ... 232 6e-60
UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498... 230 3e-59
UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941; ... 229 4e-59
UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1; Peri... 226 5e-58
UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;... 221 1e-56
UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106; ... 220 2e-56
UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;... 217 2e-55
UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI... 215 7e-55
UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179; ... 211 2e-53
UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126; ... 208 8e-53
UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alp... 200 3e-50
UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2 pol... 199 5e-50
UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa group|... 197 3e-49
UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI... 195 8e-49
UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825; ... 192 6e-48
UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1; Na... 185 9e-46
UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida stellata|... 185 1e-45
UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida stellata|... 185 1e-45
UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4 pre... 184 3e-45
UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455; ... 182 6e-45
UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15; F... 178 1e-43
UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein; ... 177 2e-43
UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa gro... 171 2e-41
UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|R... 169 8e-41
UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3; Alphaproteob... 165 1e-39
UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|R... 165 1e-39
UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5; Na... 161 2e-38
UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular or... 160 4e-38
UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42; N... 152 7e-36
UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9; Co... 150 4e-35
UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7; Eu... 147 3e-34
UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI... 133 4e-30
UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517; ... 127 3e-28
UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3; Th... 124 2e-27
UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1; Di... 123 4e-27
UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107; ... 123 5e-27
UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Eugl... 114 2e-24
UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase, sub... 111 1e-23
UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1; M... 108 2e-22
UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388; ... 106 5e-22
UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2; Cystobacteri... 106 5e-22
UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1; Wa... 105 1e-21
UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3; Bacteria|... 105 1e-21
UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 105 1e-21
UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16; c... 103 3e-21
UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=... 103 5e-21
UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16; B... 103 6e-21
UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1; Aq... 102 8e-21
UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2; Roseiflexus|... 102 1e-20
UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93; A... 100 4e-20
UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4... 99 6e-20
UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;... 99 6e-20
UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III ... 97 4e-19
UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1; Ap... 94 3e-18
UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol oxid... 92 1e-17
UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC 1.9.... 91 2e-17
UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2; Rh... 90 5e-17
UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subuni... 89 8e-17
UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=... 89 1e-16
UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1; Bl... 88 2e-16
UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobac... 88 2e-16
UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-) ... 88 2e-16
UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=... 87 4e-16
UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacil... 86 7e-16
UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15; Proteob... 86 1e-15
UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30; Proteobacte... 83 5e-15
UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI... 83 5e-15
UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia polym... 81 3e-14
UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Ae... 81 3e-14
UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase polype... 81 4e-14
UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17; B... 79 8e-14
UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia lipolyti... 79 8e-14
UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5; P... 79 1e-13
UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit... 79 1e-13
UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.... 77 5e-13
UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5; Sulfol... 76 8e-13
UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2; D... 76 1e-12
UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3; Rhodobacte... 74 4e-12
UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1; Mu... 73 1e-11
UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13; ... 72 2e-11
UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1; Kluyver... 71 4e-11
UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48; O... 70 5e-11
UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3; Proteobacter... 70 7e-11
UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1; Pl... 69 1e-10
UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2; Acidobacteri... 69 2e-10
UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit ... 69 2e-10
UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3; Ha... 68 3e-10
UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;... 65 1e-09
UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7; Ec... 62 1e-08
UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium... 60 4e-08
UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1; My... 59 1e-07
UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1; Te... 54 3e-06
UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2; Eu... 50 6e-05
UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1; Cela... 48 2e-04
UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1; Pach... 47 4e-04
UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2; En... 44 0.005
UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=... 42 0.021
UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome ox... 40 0.063
UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3 pre... 37 0.59
UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia polym... 36 1.4
UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|R... 36 1.4
UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1; Pi... 35 2.4
UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=... 35 2.4
UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2; ... 33 9.6
UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3; ... 33 9.6
>UniRef50_Q4FH11 Cluster: Cytochrome c oxidase subunit I; n=26;
Bilateria|Rep: Cytochrome c oxidase subunit I - Samia
cynthia ricini (Indian eri silkmoth)
Length = 510
Score = 264 bits (648), Expect = 1e-69
Identities = 138/222 (62%), Positives = 151/222 (68%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G+ +G++GTSLSLLIRAELG PGSLIG QIYNTIVTAHA N
Sbjct: 19 FGIWAGMVGTSLSLLIRAELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNW 78
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL+LGAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G
Sbjct: 79 LVPLMLGAPDMAFPRMNNMSFWLLPPSLTLLISSSIVENGAGTGWTVYPPLSSNIAHGGS 138
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDLAIFSLHLAGISS SFDQ+PLFV AVGITAF
Sbjct: 139 SVDLAIFSLHLAGISSILGAINFITTIINMRMNNLSFDQMPLFVWAVGITAFLLLLSLPV 198
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEV 722
AGAIT+LLTDRNLNTSFFDPAGGGDPILYQHLF F GHP++
Sbjct: 199 LAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPKL 240
>UniRef50_Q30DC3 Cluster: Cytochrome c oxidase subunit I; n=30;
Panarthropoda|Rep: Cytochrome c oxidase subunit I -
Pagyris cymothoe
Length = 487
Score = 264 bits (647), Expect = 2e-69
Identities = 138/220 (62%), Positives = 148/220 (67%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++GTSLSLLIR ELG PGSLIG QIYNTIVTAHA N L+PL+L
Sbjct: 1 MVGTSLSLLIRTELGTPGSLIGDDQIYNTIVTAHAFIMIFFMVMPIMIGGFGNWLIPLML 60
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GAPD+AFPR+NN+ F IVENGAGTG TVYPPLSSNIAH G SVDLAI
Sbjct: 61 GAPDMAFPRMNNMSFWLLPPSLILLISSSIVENGAGTGWTVYPPLSSNIAHGGSSVDLAI 120
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
FSLHLAGISS SFDQ+PLF+ AVGITA AGAIT
Sbjct: 121 FSLHLAGISSILGAINFITTIINMRINKMSFDQMPLFIWAVGITALLLLLSLPVLAGAIT 180
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+LLTDRNLNTSFFDPAGGGDPILYQHLF F GHPEVYILI
Sbjct: 181 MLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILI 220
>UniRef50_Q9MCX7 Cluster: Cytochrome c oxidase subunit I; n=181;
Coelomata|Rep: Cytochrome c oxidase subunit I - Piculus
rubiginosus
Length = 504
Score = 237 bits (581), Expect = 2e-61
Identities = 128/226 (56%), Positives = 144/226 (63%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G +G+IGT+LSLLIRAELG PG+L+G QIYN IVTAHA N
Sbjct: 23 FGAWAGMIGTALSLLIRAELGQPGTLLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 82
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G
Sbjct: 83 LVPLMIGAPDMAFPRMNNMSFWLXPPSFLLLLASSTVEAGAGTGWTVYPPLAGNLAHAGA 142
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDLAIFSLHLAGISS S Q PLFV +V ITA
Sbjct: 143 SVDLAIFSLHLAGISSILGAINFITTAINMKPPAISQYQTPLFVWSVLITAVLLLLSLPV 202
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF F GHPEVYILI
Sbjct: 203 LAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILI 248
>UniRef50_Q9MIY8 Cluster: Cytochrome c oxidase subunit 1; n=861;
root|Rep: Cytochrome c oxidase subunit 1 - Danio rerio
(Zebrafish) (Brachydanio rerio)
Length = 516
Score = 232 bits (568), Expect = 6e-60
Identities = 123/226 (54%), Positives = 141/226 (62%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G +G++GT+LSLLIRAEL PG+L+G QIYN IVTAHA N
Sbjct: 22 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPILIGGFGNW 81
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGA 141
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDL IFSLHLAG+SS S Q PLFV AV +TA
Sbjct: 142 SVDLTIFSLHLAGVSSILGAINFITTTINMKPPTISQYQTPLFVWAVLVTAVLLLLSLPV 201
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF F GHPEVYILI
Sbjct: 202 LAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILI 247
>UniRef50_P00395 Cluster: Cytochrome c oxidase subunit 1; n=44498;
root|Rep: Cytochrome c oxidase subunit 1 - Homo sapiens
(Human)
Length = 513
Score = 230 bits (562), Expect = 3e-59
Identities = 121/226 (53%), Positives = 141/226 (62%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G +G++GT+LSLLIRAELG PG+L+G IYN IVTAHA N
Sbjct: 22 FGAWAGVLGTALSLLIRAELGQPGNLLGNDHIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 81
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL++GAPD+AFPR+NN+ F +VE GAGTG TVYPPL+ N +H G
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSFWLLPPSLLLLLASAMVEAGAGTGWTVYPPLAGNYSHPGA 141
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDL IFSLHLAG+SS + Q PLFV +V ITA
Sbjct: 142 SVDLTIFSLHLAGVSSILGAINFITTIINMKPPAMTQYQTPLFVWSVLITAVLLLLSLPV 201
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF F GHPEVYILI
Sbjct: 202 LAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILI 247
>UniRef50_Q6ZLV6 Cluster: Cytochrome c oxidase subunit I; n=941;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Ophisurus macrorhynchos
Length = 546
Score = 229 bits (561), Expect = 4e-59
Identities = 121/226 (53%), Positives = 141/226 (62%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G +G++GT+LSLLIRAEL PG+L+G QIYN IVTAHA N
Sbjct: 22 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPVMIGGFGNW 81
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+ N+AH G
Sbjct: 82 LVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGVEAGAGTGWTVYPPLAGNLAHAGA 141
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDL IFSLHLAG+SS + Q PLFV +V +TA
Sbjct: 142 SVDLTIFSLHLAGVSSILGAINFITTIINMKPPAITQYQTPLFVWSVLVTAVLLLLSLPV 201
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A IT+LLTDRNLNT+FFDPAGGGDPILYQHLF F GHPEVYILI
Sbjct: 202 LAAGITMLLTDRNLNTTFFDPAGGGDPILYQHLFWFFGHPEVYILI 247
>UniRef50_A6BM65 Cluster: Cytochrome oxidase subunit I; n=1;
Periclimenes thermohydrophilus|Rep: Cytochrome oxidase
subunit I - Periclimenes thermohydrophilus
Length = 217
Score = 226 bits (552), Expect = 5e-58
Identities = 122/216 (56%), Positives = 141/216 (65%)
Frame = -3
Query: 697 NKC*YKIGSPPPAGSKNDVFKFRSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDI 518
NKC + IGSPPPAGSK +VFKFRSV +IVIAPA TGS++N+K AV T TN G S I
Sbjct: 1 NKC-WSIGSPPPAGSKKEVFKFRSVKSIVIAPASTGSESNSKMAVSNTDQTNSGMRSMVI 59
Query: 517 LFNRXXXXXXXXXXXXXIDEIPAKCSEKIARSTDLPLCAILDESGG*TVHPVPAPFSTIL 338
+R I+E PAKC+EKI STD P CAI SGG TVHPVP P STI
Sbjct: 60 PADRMLITVVMKFTAPKIEETPAKCNEKIPMSTDAPACAIPLASGGYTVHPVPTPLSTIP 119
Query: 337 LEINNIREGGRSQNLILFIRGNAISGAPSIRGTNQFPNPPXXXXXXXXXXXXKACAVTIV 158
L + ++EGG +QNL+LFIRGNA+SGAP++ GTNQFPNPP KA AVT+
Sbjct: 120 LNKSKVKEGGSNQNLMLFIRGNAMSGAPNMSGTNQFPNPPIMIGMTMKKIITKAWAVTMT 179
Query: 157 L*I*XAPINXPGLPNSARIKRLKDVPMMPXQRPQKK 50
L I PI PG PNSARIK L DVP MP P+ K
Sbjct: 180 L-IWSFPIKLPGCPNSARIKSLSDVPTMPAHAPKMK 214
>UniRef50_Q5GGF4 Cluster: Cytochrome c oxidase subunit I; n=2742;
Bilateria|Rep: Cytochrome c oxidase subunit I - Cotesia
melitaearum (Parasitoid wasp)
Length = 499
Score = 221 bits (540), Expect = 1e-56
Identities = 115/226 (50%), Positives = 139/226 (61%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G+ SG++G S+SL+IR ELG PGSLIG QIYN+IVT+HA N
Sbjct: 6 FGMWSGMLGFSMSLIIRLELGMPGSLIGNDQIYNSIVTSHAFIMIFFMVMPVMIGGFGNW 65
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+PL+LG+PD++FPR+NN+ F + G GTG TVYPPLS + H G
Sbjct: 66 LIPLMLGSPDMSFPRMNNMSFWLLIPSLLLLILSMFINVGVGTGWTVYPPLSLILGHGGM 125
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDL IFSLHLAG SS + D++ LF +V ITA
Sbjct: 126 SVDLGIFSLHLAGASSIMGAVNFITTILNMRSNLFNMDKMSLFSWSVFITAILLLLSLPV 185
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AGAIT+LLTDRN+NTSFFDP+GGGDPILYQHLF F GHPEVYILI
Sbjct: 186 LAGAITMLLTDRNMNTSFFDPSGGGDPILYQHLFWFFGHPEVYILI 231
>UniRef50_Q58PB7 Cluster: Cytochrome c oxidase subunit I; n=106;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Homalopoma maculosa
Length = 219
Score = 220 bits (538), Expect = 2e-56
Identities = 116/213 (54%), Positives = 131/213 (61%)
Frame = +3
Query: 60 GLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 239
G+ SG+IGT+LSLLIR ELG PGS IG Q+YN +VTAHA N L
Sbjct: 6 GIWSGLIGTALSLLIRVELGQPGSFIGNDQLYNVVVTAHAFVMIFFLVMPMMIGGFGNWL 65
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 419
VPL+LGAPD+AFPR+NN+ F VE+GAGTG TVYPPLS N AH G S
Sbjct: 66 VPLMLGAPDMAFPRLNNMSFWFLPPSLSLLLMSAAVESGAGTGWTVYPPLSGNTAHAGPS 125
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 599
VDLAIFSLHLAG+SS + + LFV +V ITA
Sbjct: 126 VDLAIFSLHLAGVSSILGAVNFITTVINMRWGAMKIELVSLFVWSVKITAILLLLSLPVL 185
Query: 600 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 698
AGAIT+LLTDRN NTSFFDPAGGGDPILYQHLF
Sbjct: 186 AGAITMLLTDRNFNTSFFDPAGGGDPILYQHLF 218
>UniRef50_P60620 Cluster: Cytochrome c oxidase subunit 1; n=2931;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 527
Score = 217 bits (531), Expect = 2e-55
Identities = 113/228 (49%), Positives = 138/228 (60%), Gaps = 2/228 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLI--GAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+G +G++GT S+LIR EL PG I G Q+YN ++TAHA
Sbjct: 23 FGAIAGVMGTCFSVLIRMELARPGDQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFG 82
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N VP+++GAPD+AFPR+NNI F +VE G+GTG TVYPPLS +H
Sbjct: 83 NWFVPILIGAPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGSGTGWTVYPPLSGITSHS 142
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G +VDLAIFSLHL+G+SS + +LPLFV +V +TAF
Sbjct: 143 GGAVDLAIFSLHLSGVSSILGSINFITTIFNMRGPGMTMHRLPLFVWSVLVTAFLLLLSL 202
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AGAIT+LLTDRN NT+FFDPAGGGDPILYQHLF F GHPEVYILI
Sbjct: 203 PVLAGAITMLLTDRNFNTTFFDPAGGGDPILYQHLFWFFGHPEVYILI 250
>UniRef50_Q0H8Y3 Cluster: Probable intron-encoded endonuclease aI8
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI8 (EC
3.1.-.-)]; n=103; Eukaryota|Rep: Probable intron-encoded
endonuclease aI8 precursor [Contains: Truncated
non-functional cytochrome oxidase 1; Intron-encoded
endonuclease aI8 (EC 3.1.-.-)] - Ustilago maydis (Smut
fungus)
Length = 645
Score = 215 bits (526), Expect = 7e-55
Identities = 116/228 (50%), Positives = 137/228 (60%), Gaps = 2/228 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ + + +IGT+ S+LIR EL PG L G Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHS 139
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 140 GGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSL 199
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF F GHPEVYILI
Sbjct: 200 PVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLFWFFGHPEVYILI 247
>UniRef50_P48866 Cluster: Cytochrome c oxidase subunit 1; n=179;
cellular organisms|Rep: Cytochrome c oxidase subunit 1 -
Chondrus crispus (Carragheen)
Length = 532
Score = 211 bits (515), Expect = 2e-53
Identities = 111/228 (48%), Positives = 138/228 (60%), Gaps = 2/228 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+G SG++G +S+LIR EL P + L+G QIYN ++TAHA
Sbjct: 28 FGAFSGVLGGCMSMLIRMELAQPSNHLLLGNHQIYNVLITAHAFLMIFFMVMPVMIGGFG 87
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVP+++G+PD+AFPR+NNI F +VE G GTG TVYPPLSS +H
Sbjct: 88 NWLVPIMIGSPDMAFPRLNNISFWLLPPSLCLLLMSALVEVGVGTGWTVYPPLSSIQSHS 147
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G +VDLAIFSLH++G SS S ++PLFV ++ +TAF
Sbjct: 148 GGAVDLAIFSLHISGASSILGAVNFISTILNMRSPGQSMYRIPLFVWSILVTAFLLLLAV 207
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AGAIT+LLTDRN NTSFFD +GGGDPILYQHLF F GHPEVYILI
Sbjct: 208 PVLAGAITMLLTDRNFNTSFFDASGGGDPILYQHLFWFFGHPEVYILI 255
>UniRef50_A2T435 Cluster: Cytochrome c oxidase subunit I; n=126;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Placozoan sp. BZ2423
Length = 498
Score = 208 bits (509), Expect = 8e-53
Identities = 110/218 (50%), Positives = 131/218 (60%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G SG IGT+ S+LIR EL +PGS++G +YN IVTAHA N
Sbjct: 23 FGALSGAIGTAFSMLIRLELSSPGSMLGDDHLYNVIVTAHAFVMIFFLVMPTMIGGFGNW 82
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
VPL++GAPD+AFPR+NNI F +VE GAGTG TVYPPL+S AH G
Sbjct: 83 FVPLMIGAPDMAFPRLNNISFWLLPPALFLLLGSSLVEQGAGTGWTVYPPLASIQAHSGG 142
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVD+AIFSLHLAG+SS + ++PLFV +V ITA
Sbjct: 143 SVDMAIFSLHLAGLSSILGAMNFITTVMNMRTPGMTMSRIPLFVWSVLITAILLLLSLPV 202
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXG 710
AGAIT+LLTDR NT+FFDPAGGGDPILYQHLF F G
Sbjct: 203 LAGAITMLLTDRYFNTTFFDPAGGGDPILYQHLFWFFG 240
>UniRef50_Q9ZZX1 Cluster: Intron-encoded DNA endonuclease aI5 alpha
precursor (DNA endonuclease I-SceIV) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI5 alpha (EC 3.1.-.-) (Intron-encoded
endonuclease I- SceIV)]; n=2; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI5 alpha precursor (DNA
endonuclease I-SceIV) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI5 alpha (EC 3.1.-.-) (Intron-encoded endonuclease I-
SceIV)] - Saccharomyces cerevisiae (Baker's yeast)
Length = 630
Score = 200 bits (488), Expect = 3e-50
Identities = 109/226 (48%), Positives = 132/226 (58%), Gaps = 2/226 (0%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+ SG+ GT++SL+IR EL PGS L G Q++N +V HA N
Sbjct: 23 IFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNY 82
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS AH G
Sbjct: 83 LLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGP 142
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 143 SVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPV 202
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF F GHPEVYILI
Sbjct: 203 LSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGHPEVYILI 248
>UniRef50_A7UG06 Cluster: Cytochrome oxidase subunits 1 and 2
polyprotein; n=1; Phaeosphaeria nodorum SN15|Rep:
Cytochrome oxidase subunits 1 and 2 polyprotein -
Phaeosphaeria nodorum SN15
Length = 789
Score = 199 bits (486), Expect = 5e-50
Identities = 109/227 (48%), Positives = 129/227 (56%), Gaps = 1/227 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPG-SLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 233
+ L +G+IGT+ S+LIR EL PG I Q+YN+I+TAHA N
Sbjct: 22 YALFAGLIGTAFSVLIRLELSGPGVQYIADNQLYNSIITAHAIIMIFFMVMPALIGGFGN 81
Query: 234 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 413
L+PL LG PD+ FPR+NNI + +ENG GTG T+YPPLS +H G
Sbjct: 82 FLLPLGLGGPDMGFPRLNNISYLLLIPSIVLFLFAGGIENGVGTGWTLYPPLSGIQSHSG 141
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 593
SVDLAIF LHL+GISS +L LF AV ITA
Sbjct: 142 PSVDLAIFGLHLSGISSLLGAMNFMTTTFNMRSPGIRLHKLILFAWAVVITAVLLLLSLP 201
Query: 594 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AG IT++LTDRN NTSFF+ AGGGDPILYQHLF F GHPEVYILI
Sbjct: 202 VLAGGITMVLTDRNFNTSFFEVAGGGDPILYQHLFWFFGHPEVYILI 248
>UniRef50_Q7YEU6 Cluster: Endonuclease; n=4; Fungi/Metazoa
group|Rep: Endonuclease - Saccharomyces servazzii
(Yeast)
Length = 675
Score = 197 bits (480), Expect = 3e-49
Identities = 107/226 (47%), Positives = 131/226 (57%), Gaps = 2/226 (0%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
L SG+ G+++S++IR EL PGS L G Q++N +V HA N
Sbjct: 23 LFSGMAGSAMSMIIRMELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLAMPALIGGFGNY 82
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
++PL++GA D++FPRIN+I F +VE+GAGTG TVYPPLSS AH G
Sbjct: 83 MLPLMIGATDMSFPRINSIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGP 142
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDLAIFSLHL ISS S ++PLFV A+ ITAF
Sbjct: 143 SVDLAIFSLHLTSISSLLGAINFIVTTLNMRTNGMSMHKMPLFVWAIFITAFLLLLSLPV 202
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+ IT+LL DRN NTSFF+ AGGGDPI YQH F F GHPEVYILI
Sbjct: 203 LSAGITMLLMDRNFNTSFFEVAGGGDPIFYQHAFWFFGHPEVYILI 248
>UniRef50_Q0H8Y1 Cluster: Probable intron-encoded endonuclease aI5
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI5 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI5 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI5 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 536
Score = 195 bits (476), Expect = 8e-49
Identities = 106/216 (49%), Positives = 127/216 (58%), Gaps = 2/216 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ + + +IGT+ S+LIR EL PG L G Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHS 139
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 140 GGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSL 199
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 698
AGAIT+LLTDRN NTSF+DPAGGGDPILYQHLF
Sbjct: 200 PVLAGAITMLLTDRNFNTSFYDPAGGGDPILYQHLF 235
>UniRef50_Q1XA94 Cluster: Cytochrome c oxidase subunit I; n=825;
Eukaryota|Rep: Cytochrome c oxidase subunit I -
Paracoccidioides brasiliensis
Length = 710
Score = 192 bits (469), Expect = 6e-48
Identities = 103/227 (45%), Positives = 128/227 (56%), Gaps = 1/227 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPG-SLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 233
+ L SG++GT+ S+LIR EL PG I Q+YN+I+T+H N
Sbjct: 48 FALFSGLLGTAFSVLIRLELSGPGIQYIEDNQLYNSIITSHGVIMIFFMVMPALIGGFGN 107
Query: 234 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 413
L+P+++G PD+AFPR+NN+ + I+ENG GTG T+YPPLS +H
Sbjct: 108 FLLPILIGGPDMAFPRLNNVSYWLLIPSLFLFVFAAIIENGVGTGWTLYPPLSGIQSHSS 167
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 593
VDL IF LHL+GISS +L LF AV ITA
Sbjct: 168 MGVDLGIFGLHLSGISSLLGAINFIATLLNMRSPGIKLHKLALFGWAVVITAVLLLLSLP 227
Query: 594 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A AIT+LLTDRNLNTSF++ AGGGD ILYQHLF F GHPEVYILI
Sbjct: 228 VLAAAITMLLTDRNLNTSFYELAGGGDAILYQHLFWFFGHPEVYILI 274
>UniRef50_Q9G8S1 Cluster: Cytochrome c oxidase subunit 1; n=1;
Naegleria gruberi|Rep: Cytochrome c oxidase subunit 1 -
Naegleria gruberi
Length = 633
Score = 185 bits (451), Expect = 9e-46
Identities = 100/228 (43%), Positives = 119/228 (52%), Gaps = 2/228 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+G+ +G + LS+L+R EL PG L G YN I T H
Sbjct: 24 FGVFNGFLAVLLSMLMRLELAFPGDQILFGEYHFYNMITTVHGVLMLFVVVMPILFGGFG 83
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N VP+++GAPD++FPR+NN F E G GTG TVYPPLSS +H
Sbjct: 84 NYFVPILIGAPDMSFPRLNNFSFWLLPGAILLAVLATYSEGGPGTGWTVYPPLSSLQSHS 143
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G SVDL IFS HL GI S LPLFV +V +T+F
Sbjct: 144 GASVDLMIFSFHLVGIGSIVAAINFICTIFYYKNEAMFNKDLPLFVWSVAVTSFLVIVAI 203
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A AIT+LL DRN NTSF+DP GGGD +LYQHLF F GHPEVYILI
Sbjct: 204 PVLAAAITLLLFDRNFNTSFYDPVGGGDVVLYQHLFWFFGHPEVYILI 251
>UniRef50_Q6ED53 Cluster: Cox1-i5 protein; n=2; Candida
stellata|Rep: Cox1-i5 protein - Candida stellata (Yeast)
Length = 763
Score = 185 bits (450), Expect = 1e-45
Identities = 97/228 (42%), Positives = 131/228 (57%), Gaps = 2/228 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELG--NPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ L SG++G SLS+L+R EL NP L+ Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A +T+LL DRN NTSFF +GGGDP+LY+H+F F GHPEVYILI
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILI 265
>UniRef50_Q6ED52 Cluster: Cox1-i4 protein; n=1; Candida
stellata|Rep: Cox1-i4 protein - Candida stellata (Yeast)
Length = 676
Score = 185 bits (450), Expect = 1e-45
Identities = 97/228 (42%), Positives = 131/228 (57%), Gaps = 2/228 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELG--NPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ L SG++G SLS+L+R EL NP L+ Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A +T+LL DRN NTSFF +GGGDP+LY+H+F F GHPEVYILI
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGHPEVYILI 265
>UniRef50_P03878 Cluster: Intron-encoded DNA endonuclease aI4
precursor (DNA endonuclease I- SceII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI4 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceII)]; n=4; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI4 precursor (DNA
endonuclease I- SceII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI4 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 556
Score = 184 bits (447), Expect = 3e-45
Identities = 102/226 (45%), Positives = 127/226 (56%), Gaps = 2/226 (0%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+ SG+ GT++SL+IR EL PGS L G Q++N +V HA N
Sbjct: 23 IFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHAVLMIFFLVMPALIGGFGNY 82
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+PL++GA D AFPRINNI F +VE+GAGTG TVYPPLSS AH G
Sbjct: 83 LLPLMIGATDTAFPRINNIAFWVLPMGLVCLVTSTLVESGAGTGWTVYPPLSSIQAHSGP 142
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDLAIF+LHL ISS + +LPLFV ++ ITAF
Sbjct: 143 SVDLAIFALHLTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWSIFITAFLLLLSLPV 202
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+ IT+LL DRN NTSFF+ +GGGDPILY+HLF F G I++
Sbjct: 203 LSAGITMLLLDRNFNTSFFEVSGGGDPILYEHLFWFFGQTVATIIM 248
>UniRef50_Q8SK39 Cluster: Cytochrome c oxidase subunit I; n=455;
cellular organisms|Rep: Cytochrome c oxidase subunit I -
Pandaka lidwilli
Length = 507
Score = 182 bits (444), Expect = 6e-45
Identities = 100/201 (49%), Positives = 118/201 (58%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G +G++GT+LSLLIRAEL PG+L+G QIYN IVTAHA N
Sbjct: 11 FGAWAGMVGTALSLLIRAELSQPGALLGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNW 70
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+PL++GAPD+AFPR+NN+ F +E GAGTG TVYPPL+ N+AH G
Sbjct: 71 LIPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSGIEAGAGTGWTVYPPLAGNLAHAGA 130
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDL IFSLHLAGISS S Q PLFV AV ITA
Sbjct: 131 SVDLTIFSLHLAGISSILGAINFITTIMNMKPPAISQYQTPLFVWAVLITAVLLLLSLPV 190
Query: 597 XAGAITILLTDRNLNTSFFDP 659
A IT+LLTDRNLNT+FFDP
Sbjct: 191 LAAGITMLLTDRNLNTTFFDP 211
>UniRef50_Q8SHP5 Cluster: Cytochrome c oxidase subunit I; n=15;
Fungi/Metazoa group|Rep: Cytochrome c oxidase subunit I
- Trichoderma reesei (Hypocrea jecorina)
Length = 635
Score = 178 bits (433), Expect = 1e-43
Identities = 101/231 (43%), Positives = 126/231 (54%), Gaps = 5/231 (2%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPG-SLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 233
+ L SG++GT+ S+LIR EL PG I Q+YN+I+TAHA N
Sbjct: 50 FALFSGLLGTAFSVLIRLELSGPGVQFIANNQLYNSIITAHAILMIFFMVMPALIGGFGN 109
Query: 234 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV----YPPLSSNI 401
L+PL++G PD+AFPR+NNI F I+E G GTG T+ YPPLS
Sbjct: 110 FLMPLMIGGPDMAFPRLNNISFWLLPPSLLLLVFSAIIEGGVGTGWTLLKDKYPPLSGLQ 169
Query: 402 AHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 581
+H G SVDLAIF+LHL+G+SS +L LF +
Sbjct: 170 SHSGPSVDLAIFALHLSGVSSLLGSINFITTVANMRTPGIKLHKLALF-------GWATW 222
Query: 582 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
IT++LTDRN NTSFF+ AGGGDPIL+QHLF F GHPEVYILI
Sbjct: 223 SSRSRYFLGITMVLTDRNFNTSFFEVAGGGDPILFQHLFWFFGHPEVYILI 273
>UniRef50_Q8M352 Cluster: I-SceII DNA endonuclease-like protein;
n=1; Saccharomyces castellii|Rep: I-SceII DNA
endonuclease-like protein - Saccharomyces castellii
(Yeast)
Length = 598
Score = 177 bits (431), Expect = 2e-43
Identities = 98/218 (44%), Positives = 122/218 (55%), Gaps = 2/218 (0%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
L SG+ GT++SL+IR EL PG L G Q++N +V HA N
Sbjct: 23 LFSGMAGTAMSLIIRLELAAPGQQYLHGNNQLFNVLVVGHAILMIFFMVMPALIGGFGNY 82
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
++PL++GA D AFPRINNI F +VE+GAGTG TVYPPL+S AH G
Sbjct: 83 MLPLMIGATDTAFPRINNIGFWLLPMGLVCLVTSTLVESGAGTGWTVYPPLASIQAHSGP 142
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
SVDLAIF+LH+ ISS + +LPLFV A+ ITA
Sbjct: 143 SVDLAIFALHMTSISSLLGAINFIVTTLNMRTNGMTMHKLPLFVWAILITAVLLLLTLPV 202
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXG 710
+ +T+LL DRN NTSFF+ AGGGDPILY+HLF F G
Sbjct: 203 LSAGVTMLLLDRNFNTSFFEVAGGGDPILYEHLFWFFG 240
>UniRef50_Q9B6E6 Cluster: COX1-i5 protein; n=3; Fungi/Metazoa
group|Rep: COX1-i5 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 608
Score = 171 bits (416), Expect = 2e-41
Identities = 97/227 (42%), Positives = 122/227 (53%), Gaps = 2/227 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ L S +IGT LS +IR EL N GS L G Q +N ++TAHA
Sbjct: 26 FALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFG 85
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N L+PL+LGA D+AF R+NNI F +VE GAGTG TVY PL+ +H
Sbjct: 86 NYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVYFPLAGIQSHS 145
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G +VDLAIFSLHL+G SS ++ +PLF AV TA
Sbjct: 146 GPAVDLAIFSLHLSGFSSLLGAINFITTFINMRTIGMKYENVPLFAWAVLFTAILLLLSL 205
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
A +T+ + DRN NTSFF+ AGGGD +LYQHLF + HPEV I+
Sbjct: 206 PVLAAGLTMGIFDRNFNTSFFEYAGGGDAVLYQHLFYWWNHPEVKII 252
>UniRef50_Q6ED51 Cluster: Cox-i3 protein; n=1; Candida stellata|Rep:
Cox-i3 protein - Candida stellata (Yeast)
Length = 588
Score = 169 bits (410), Expect = 8e-41
Identities = 92/230 (40%), Positives = 128/230 (55%), Gaps = 4/230 (1%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELG--NPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ L SG++G SLS+L+R EL NP L+ Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGH--PEVYILI 734
A +T+LL DRN NTSFF +GGGDP+LY+H+F F G P + I+I
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIFWFFGQIWPIIIIII 267
>UniRef50_Q1NET5 Cluster: Cytochrome-c oxidase; n=3;
Alphaproteobacteria|Rep: Cytochrome-c oxidase -
Sphingomonas sp. SKA58
Length = 556
Score = 165 bits (401), Expect = 1e-39
Identities = 100/246 (40%), Positives = 130/246 (52%), Gaps = 20/246 (8%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPG----------------SLIGAXQIYNTIVTAHAXXX 188
+ + +GIIG ++S L+RAEL PG +L A ++N ++TAH
Sbjct: 46 FAIIAGIIGGAISGLMRAELAEPGIQYLQTWARFSDGPSATLDQAYHLWNVLITAHGLIM 105
Query: 189 XXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVE----NG 356
N VP+++GAPD+AFPR+NNI F V NG
Sbjct: 106 VFFMVMPAMIGGFGNWFVPIMIGAPDMAFPRMNNISFWLLIPAFALLLGSTFVPGGTGNG 165
Query: 357 AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL 536
AGTG TVY PLS++ G +VD+AI SLH+AG SS + ++
Sbjct: 166 AGTGWTVYAPLSTS-GSAGPAVDMAILSLHIAGASSILGAINFITTILNMRAPGMTLHKM 224
Query: 537 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHP 716
PLFV +V +TAF A AIT+LLTDRN T+F+D AGGGDP LYQHLF F GHP
Sbjct: 225 PLFVWSVLVTAFLLLLALPVLAAAITMLLTDRNFGTTFYDAAGGGDPELYQHLFWFFGHP 284
Query: 717 EVYILI 734
EVYI+I
Sbjct: 285 EVYIMI 290
>UniRef50_Q6ED50 Cluster: Cox-i2 protein; n=1; Candida stellata|Rep:
Cox-i2 protein - Candida stellata (Yeast)
Length = 586
Score = 165 bits (400), Expect = 1e-39
Identities = 87/216 (40%), Positives = 121/216 (56%), Gaps = 2/216 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELG--NPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ L SG++G SLS+L+R EL NP L+ Q++N ++TAHA
Sbjct: 38 FSLFSGLVGLSLSVLMRIELSSPNPQILMHNGQLWNVLITAHALFMVFYLVMPITMGALA 97
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVPL +G+ D AFPRINN+ F +++ G G+G T+YPPL+S +H
Sbjct: 98 NYLVPLQIGSNDTAFPRINNLAFVVLLPSMLFAVLSCLIDEGPGSGWTLYPPLTSLQSHS 157
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G S+D+AIF+LHL+G+SS + +LPLFV +V ITA
Sbjct: 158 GSSIDMAIFALHLSGLSSIFGAINLMVTIINMRANGMDYSKLPLFVWSVLITAVLIILAL 217
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF 698
A +T+LL DRN NTSFF +GGGDP+LY+H+F
Sbjct: 218 PVLAAGLTMLLMDRNFNTSFFVVSGGGDPLLYEHIF 253
>UniRef50_Q9MLW1 Cluster: Cytochrome c oxidase subunit I; n=5;
Naupactini|Rep: Cytochrome c oxidase subunit I -
Galapaganus collaris
Length = 406
Score = 161 bits (390), Expect = 2e-38
Identities = 88/156 (56%), Positives = 97/156 (62%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 425
L LGAPD FPR N+ F VE GAGTG TV PPLS+NIAH G SVD
Sbjct: 4 LXLGAPDXXFPRXINMSFWFLPPXLSFFLXSSXVEKGAGTGWTVSPPLSANIAHEGSSVD 63
Query: 426 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
LAIFSLH+AG+ S + ++PLFV AV ITA AG
Sbjct: 64 LAIFSLHMAGVXSILGAINFISTVLNMRPSGMTPXRMPLFVWAVEITAILLLLSLPVLAG 123
Query: 606 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGH 713
AIT+LLTDRN+NTSFFDPAGGGDPILYQHLF F GH
Sbjct: 124 AITMLLTDRNINTSFFDPAGGGDPILYQHLFWFXGH 159
>UniRef50_Q28SZ5 Cluster: Cytochrome-c oxidase; n=50; cellular
organisms|Rep: Cytochrome-c oxidase - Jannaschia sp.
(strain CCS1)
Length = 628
Score = 160 bits (388), Expect = 4e-38
Identities = 77/195 (39%), Positives = 109/195 (55%)
Frame = +3
Query: 150 IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXX 329
++N ++T H N +PL++GAPD+AFPR+NN+ +
Sbjct: 159 LWNVLITGHGVLMMFFVVIPALFGGFGNYFMPLMIGAPDMAFPRLNNLSYWMYVAGTCLA 218
Query: 330 XXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXX 509
+++ GAG G T YPP+S+ R+VD AIF++H++G SS
Sbjct: 219 FCSVMIDGGAGPGWTFYPPISAQGVETSRAVDFAIFAVHVSGASSILGSINFITTFLNMR 278
Query: 510 XXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQ 689
+ ++PLF +V +TA+ AGAIT+LLTDRN T+FFDPAGGGDPIL+Q
Sbjct: 279 APGMTLHKVPLFAWSVFVTAWLLLLSLPVLAGAITMLLTDRNFGTTFFDPAGGGDPILFQ 338
Query: 690 HLF*FXGHPEVYILI 734
H+F F GHPEVYI+I
Sbjct: 339 HIFWFFGHPEVYIVI 353
>UniRef50_O47573 Cluster: Cytochrome c oxidase subunit I; n=42;
Nematoda|Rep: Cytochrome c oxidase subunit I -
Onchocerca volvulus
Length = 548
Score = 152 bits (369), Expect = 7e-36
Identities = 82/227 (36%), Positives = 114/227 (50%), Gaps = 2/227 (0%)
Frame = +3
Query: 60 GLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN 233
G +G+ G+ LS+LIR EL +PG G+ Q+YN+++T H N
Sbjct: 32 GYWAGLGGSVLSMLIRFELSSPGGHLFFGSGQVYNSVLTMHGVLMIFFLVMPILIGGFGN 91
Query: 234 *LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRG 413
++PL+LGAP++AFPR+N + F + G G+ T YPPLS
Sbjct: 92 WMLPLMLGAPEMAFPRVNALSFWFTFVALLMVYQSFFIGGGPGSSWTFYPPLSVE-GQPE 150
Query: 414 RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXX 593
S+D I LH GI S + DQ+ +FV +T+F
Sbjct: 151 LSLDTMILGLHTVGIGSLLGAINFMVTTQNMRSTAVTLDQISMFVWTSYLTSFLLVLSVP 210
Query: 594 XXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AG++ LL DRN NTSF+D GG+P+LYQHLF F GHPEVY++I
Sbjct: 211 VLAGSLLFLLLDRNFNTSFYDTKKGGNPLLYQHLFWFFGHPEVYVII 257
>UniRef50_Q5W914 Cluster: Cytochrome c oxidase subunit I; n=9;
Coelomata|Rep: Cytochrome c oxidase subunit I - Lingula
unguis
Length = 573
Score = 150 bits (363), Expect = 4e-35
Identities = 82/226 (36%), Positives = 115/226 (50%), Gaps = 1/226 (0%)
Frame = +3
Query: 60 GLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 239
GL SG+ G SLS +R EL +PG + +Y++I+T HA N
Sbjct: 25 GLWSGVFGLSLSHCMRIELSHPGEWLQVGYMYHSIMTMHAFMMIFFFVMPTSIGGLGNWF 84
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 419
+PL++ D++ PR+NN+ + G G G T+YPPLS++ G
Sbjct: 85 IPLMIKIKDLSMPRLNNLSVWLALGSLFLMCMAFLSSGGLGCGWTMYPPLSNSEFMDGLP 144
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQL-PLFV*AVGITAFXXXXXXXX 596
+DLA+FSLH+AG+SS F L P+ + + T+
Sbjct: 145 IDLAVFSLHMAGMSSIAGSINFLVTIFNMRMGALFFMSLNPMLIWTLFGTSILLVTSVPV 204
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A +T+LL DR+ +TSF+ P GGGDPIL+QHLF F GHPEVYILI
Sbjct: 205 LAAGLTLLLLDRHFSTSFYYPEGGGDPILWQHLFWFFGHPEVYILI 250
>UniRef50_P14544 Cluster: Cytochrome c oxidase subunit 1; n=7;
Eukaryota|Rep: Cytochrome c oxidase subunit 1 -
Leishmania tarentolae (Sauroleishmania tarentolae)
Length = 549
Score = 147 bits (356), Expect = 3e-34
Identities = 82/226 (36%), Positives = 108/226 (47%), Gaps = 2/226 (0%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAELG--NPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+ SG +G SL IR EL G L G Q YN ++T+H N
Sbjct: 25 ILSGFVGYVYSLFIRLELSLIGCGILFGDYQFYNVLITSHGLIMVFAFIMPVMMGGLVNY 84
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
+P++ G PD+ FPR+NN+ F + E G G G T+YP L H
Sbjct: 85 FIPVMAGFPDMVFPRLNNMSFWMYLAGFGCVVNGFLTEEGMGVGWTLYPTLICIDFHSSL 144
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ D +F++HL GISS SF LF+ A ITA
Sbjct: 145 ACDFVMFAVHLLGISSILNSINLLGTLFCCRRKFFSFLSWSLFIWAALITAILLIITLPV 204
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AG +T++L DRN NTSF+D GGGD IL+QH+F F GHPEVYI++
Sbjct: 205 LAGGVTLILCDRNFNTSFYDVVGGGDLILFQHIFWFFGHPEVYIIL 250
>UniRef50_Q0H8Y0 Cluster: Probable intron-encoded endonuclease aI4
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI4 (EC
3.1.-.-)]; n=3; Basidiomycota|Rep: Probable
intron-encoded endonuclease aI4 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI4 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 530
Score = 133 bits (322), Expect = 4e-30
Identities = 78/185 (42%), Positives = 97/185 (52%), Gaps = 2/185 (1%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ + + +IGT+ S+LIR EL PG L G Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N LVP+++GAPD+AFPR+NNI F VE GAGTG TVYPPLS +H
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVYPPLSGLQSHS 139
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G SVDLAIFSLHL+GISS + +LPLFV A+ +TA
Sbjct: 140 GGSVDLAIFSLHLSGISSMLGAMNFITTVLNMRNPGMTLHKLPLFVWAIFVTAILLLLSL 199
Query: 591 XXXAG 605
AG
Sbjct: 200 PVLAG 204
>UniRef50_Q9B8X8 Cluster: Cytochrome c oxidase subunit I; n=517;
Bilateria|Rep: Cytochrome c oxidase subunit I -
Schistosoma mansoni (Blood fluke)
Length = 609
Score = 127 bits (306), Expect = 3e-28
Identities = 82/226 (36%), Positives = 105/226 (46%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+GL G IG LSLLIR L +P + + +YN +VT H N
Sbjct: 120 FGLWGGFIGLGLSLLIRLNLCDPYYNLVSVDVYNYLVTNHGVAMIFFFLMPILIGGFGNY 179
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
+P+ L D+ PR+N++ G G G T+YPPLS G
Sbjct: 180 FLPIFLCLDDLLLPRLNSLSLWLMVPSIFYMELSLYY--GCGIGWTLYPPLSI-WEGSGF 236
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
VD +FSLHLAG+SS S + V A T+
Sbjct: 237 GVDYLMFSLHLAGVSSLIGSVNFISTIFSRLSFNCS-----IIVWAYLFTSVLLLLSLPV 291
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A IT+LL DRN T+FF+P+GGGDPIL+QHLF F GHPEVY+LI
Sbjct: 292 LASGITMLLFDRNFGTAFFEPSGGGDPILFQHLFWFFGHPEVYVLI 337
>UniRef50_Q36097 Cluster: Cytochrome c oxidase subunit 1; n=3;
Theileria|Rep: Cytochrome c oxidase subunit 1 -
Theileria parva
Length = 481
Score = 124 bits (299), Expect = 2e-27
Identities = 72/224 (32%), Positives = 105/224 (46%), Gaps = 3/224 (1%)
Frame = +3
Query: 72 GIIGTSLSLLIRAELGNPGSLI---GAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 242
G+IG +S+LIR EL G I +IYN + T H N L
Sbjct: 32 GMIGFYMSVLIRTELSMSGLKIITMDTLEIYNLLFTLHGLIMVFFNIMTGLFGGIGNYLY 91
Query: 243 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSV 422
P++LG D+ +PR+N +E G+GTG T+YPPLS+++++ G +
Sbjct: 92 PVLLGYCDVVYPRVNLYSLLFQPIGFVLVVSSIYLEIGSGTGWTLYPPLSTSLSNVG--I 149
Query: 423 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 602
D IF L AGI+S D++ ++ +T+F
Sbjct: 150 DFIIFGLLAAGIASTLSSVNFITTFTSVKTIGFVIDRISPAAWSIVLTSFLLLLSLPVVT 209
Query: 603 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
++ DR+ NT FF+ + GDP+LYQHLF F GHPEVYI+I
Sbjct: 210 AVFLMVFLDRHYNTMFFESSNSGDPVLYQHLFWFFGHPEVYIMI 253
>UniRef50_Q9XKD7 Cluster: Cytochrome c oxidase subunit I; n=1;
Dicyema misakiense|Rep: Cytochrome c oxidase subunit I -
Dicyema misakiense
Length = 473
Score = 123 bits (297), Expect = 4e-27
Identities = 77/225 (34%), Positives = 106/225 (47%)
Frame = +3
Query: 60 GLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 239
G+ S ++G S SLL R +L P L +YN VT H N L
Sbjct: 20 GIFSALLGMSFSLLFRLQLAFPSIL--TSDVYNAFVTLHGLVMVFFAAMPTAIGFFANLL 77
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRS 419
+P PD+ FPR+N + F ++ + A G T YPPLSS S
Sbjct: 78 IPYHCNLPDLLFPRMNALSFWLMPFSLSL-----LLFSMASAGWTFYPPLSS----LSPS 128
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 599
V+ ++FSLHLAGI+S + L LF ++ + +
Sbjct: 129 VEFSVFSLHLAGIASLISSCNFLVTMLATRTSL--WYSLSLFCWSIVLVSLLLVLSLPVL 186
Query: 600 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A IT++LTD++L T F+D GGDP+LYQHLF F GHPEVY++I
Sbjct: 187 AVGITLILTDKHLGTCFYDATMGGDPLLYQHLFWFFGHPEVYVVI 231
>UniRef50_Q02766 Cluster: Cytochrome c oxidase subunit 1; n=107;
Alveolata|Rep: Cytochrome c oxidase subunit 1 -
Plasmodium falciparum
Length = 476
Score = 123 bits (296), Expect = 5e-27
Identities = 75/225 (33%), Positives = 108/225 (48%), Gaps = 4/225 (1%)
Frame = +3
Query: 72 GIIGTSLSLLIRAELGNPGSLIGAXQ---IYNTIVTAHAXXXXXXXXXXXXXXXXXN*LV 242
G G LS+++R EL + I A + +YN I T H N +
Sbjct: 29 GSYGFLLSVILRTELYSSSLRIIAQENVNLYNMIFTIHGIIMIFFNIMPGLFGGFGNYFL 88
Query: 243 PLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR-S 419
P++ G+P++A+PRIN+I E G GTG T+YPPLS+++ +
Sbjct: 89 PILCGSPELAYPRINSISLLLQPIAFVLVILSTAAEFGGGTGWTLYPPLSTSLMSLSPVA 148
Query: 420 VDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXX 599
VD+ IF L ++G++S + L + ++ IT+
Sbjct: 149 VDVIIFGLLVSGVASIMSSLNFITTVMHLRAKGLTLGILSVSTWSLIITSGMLLLTLPVL 208
Query: 600 AGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
G + +LL+D + NT FFDP GDPILYQHLF F GHPEVYILI
Sbjct: 209 TGGVLMLLSDLHFNTLFFDPTFAGDPILYQHLFWFFGHPEVYILI 253
>UniRef50_Q34463 Cluster: Cytochrome oxidase subunit I; n=3; Euglena
gracilis|Rep: Cytochrome oxidase subunit I - Euglena
gracilis
Length = 495
Score = 114 bits (275), Expect = 2e-24
Identities = 71/231 (30%), Positives = 110/231 (47%), Gaps = 6/231 (2%)
Frame = +3
Query: 60 GLXSGIIGTSLSLLIRAELGNPGSLI----GAXQIYNTIVTAHAXXXXXXXXXXXXXXXX 227
G +GI+G +S+LIR EL G I IYN +T H
Sbjct: 29 GYIAGILGYIISMLIRMELNTQGLAIVRKVKEVTIYNNWITIHGLIMLFVFIMPVGIGFY 88
Query: 228 XN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIA 404
N L+P+++G +++ PR+N I F ++ +G T+YPPLS+ A
Sbjct: 89 GNYLIPMLIGTSELSMPRMNGISFWMLIVGVVIFVISNVLMSKPISSGWTLYPPLSTRDA 148
Query: 405 HR-GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXX 581
G ++DL++ +H+ GISS +F + ++ ++ +T+
Sbjct: 149 DNIGVNIDLSLLVVHVLGISSTIGSVNYITTNKYNRHVGLTFMNINIYNFSIIVTSILLI 208
Query: 582 XXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AIT LL DRN+N++ +D G DP+LYQHLF F GHPEVY++I
Sbjct: 209 GSLPILGVAITGLLLDRNINSTIYDVIG--DPVLYQHLFWFFGHPEVYVII 257
>UniRef50_Q18JR5 Cluster: Cytochrome-c-like terminal oxidase,
subunit I; n=2; Halobacteriaceae|Rep: Cytochrome-c-like
terminal oxidase, subunit I - Haloquadratum walsbyi
(strain DSM 16790)
Length = 634
Score = 111 bits (268), Expect = 1e-23
Identities = 80/234 (34%), Positives = 111/234 (47%), Gaps = 8/234 (3%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+GL + +G + +L+R EL +PG + + YN+++T+H N
Sbjct: 104 FGLTAFAVGGLMVVLMRIELADPGMTVISNTFYNSLLTSHGITMLFLFATPIIAAFS-NY 162
Query: 237 LVPLILGAPDIAFPRINNIRFXXX--XXXXXXXXXXXIVEN-GAGTG*TVYPPLS----- 392
L+PL++GA D+AFPRIN I F I E A TG T+Y PLS
Sbjct: 163 LIPLLIGADDMAFPRINAIAFWLLPPAALLIWAGFFPIPEVIPAQTGWTMYTPLSVGEGM 222
Query: 393 SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAF 572
N A+ G VDL + LHL+G+S+ S+ L +F + +
Sbjct: 223 GNQANAG--VDLMLLGLHLSGVSATMGSINFIATIFTERGKNVSWANLDIFSWTILTQSG 280
Query: 573 XXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
AI +LL DRN TSFF AG G IL+QHLF F GHPEVYI++
Sbjct: 281 LILFAFPLLGSAIMMLLFDRNFGTSFF--AGEGGAILWQHLFWFFGHPEVYIIV 332
>UniRef50_Q1CZF1 Cluster: Cytochrome c oxidase, subunit I; n=1;
Myxococcus xanthus DK 1622|Rep: Cytochrome c oxidase,
subunit I - Myxococcus xanthus (strain DK 1622)
Length = 556
Score = 108 bits (259), Expect = 2e-22
Identities = 72/227 (31%), Positives = 99/227 (43%), Gaps = 1/227 (0%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
W L ++G +LLIR EL PG I YN T H N
Sbjct: 52 WVLLFFLVGGIFALLIRVELLTPGPTIMDAMTYNRTFTLHGLVMIFLFMIPAIPAVFGNF 111
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
++PL+LGA D+AFPR+N + ++ G TG T Y P S AH
Sbjct: 112 MLPLMLGAKDVAFPRLNLLSLYIYLAGAVLALWG-MLNGGLDTGWTFYTPYS---AHTTT 167
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+V +F + G SS ++ ++PLFV A+ T+
Sbjct: 168 TVAPVLFGAFIIGFSSIVTGINFIVTCHTMRAPGITWFKMPLFVWAIYATSCIQVLATPV 227
Query: 597 XAGAITILLTDRNL-NTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
G + +L+T NL FDPA GGDP+L+QHLF F HP VYI++
Sbjct: 228 I-GLLLVLVTVENLFGFGMFDPARGGDPVLFQHLFWFYSHPAVYIMV 273
>UniRef50_Q951H1 Cluster: Cytochrome c oxidase subunit I; n=388;
Coelomata|Rep: Cytochrome c oxidase subunit I - Picoides
borealis
Length = 513
Score = 106 bits (255), Expect = 5e-22
Identities = 58/112 (51%), Positives = 70/112 (62%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G +G+IGT+LSLLIRAELG PG+L+G Q N IVTAHA N
Sbjct: 23 FGAWAGMIGTALSLLIRAELGQPGTLLGDDQXXNVIVTAHAFVMIFXMXMPIMIGGFGNW 82
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS 392
LVPL++GAPD+AFPR+NN+ F VE GAGTG TVYPPL+
Sbjct: 83 LVPLMIGAPDMAFPRMNNMSFWLLPPSFLLLLASSTVEAGAGTGWTVYPPLA 134
>UniRef50_A7HEB5 Cluster: Cytochrome-c oxidase; n=2;
Cystobacterineae|Rep: Cytochrome-c oxidase -
Anaeromyxobacter sp. Fw109-5
Length = 596
Score = 106 bits (255), Expect = 5e-22
Identities = 76/244 (31%), Positives = 106/244 (43%), Gaps = 19/244 (7%)
Frame = +3
Query: 60 GLXSGIIGTSLSLLIRAELGNP-------GSLI-GAXQI-----YNTIVTAHAXXXXXXX 200
GL ++G +L++LIR + G P G L+ G + Y I T H
Sbjct: 42 GLLFLLVGGALAMLIRWQWGFPYRPVPLVGRLLFGESGVIGPATYQQIFTTHGLVMIFFA 101
Query: 201 XXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TV 377
N L+PL++GA D+AFPR+N F G AG G T
Sbjct: 102 VTPVLIGTFGNLLIPLMIGARDMAFPRLNMYSFWTFLLSQLLVLASFFAPLGSAGAGWTT 161
Query: 378 YPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV 557
Y PLS+N+ G L + ++ + G+SS ++ +LPL + +
Sbjct: 162 YTPLSTNVGMPGMGQTLVVAAIFVTGVSSTMGAVNYITTVIRLRAPGMTYMRLPLTIWGL 221
Query: 558 GITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA-----GGGDPILYQHLF*FXGHPEV 722
+TA A +LL DR+ T FF GGGDPIL+QHLF GHPEV
Sbjct: 222 WLTAILNALFVPVLGSAALLLLLDRSFGTEFFVAGASAVRGGGDPILWQHLFWIFGHPEV 281
Query: 723 YILI 734
YI+I
Sbjct: 282 YIMI 285
>UniRef50_Q59IQ0 Cluster: Cytochrome c oxidase subunit I; n=1;
Watasenia scintillans|Rep: Cytochrome c oxidase subunit
I - Watasenia scintillans (Sparkling enope)
Length = 217
Score = 105 bits (252), Expect = 1e-21
Identities = 60/136 (44%), Positives = 75/136 (55%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN* 236
+G+ SG++GTSLSL+IR ELG PGSL+ Q+YN +VTAH N
Sbjct: 6 FGIWSGLLGTSLSLMIRTELGQPGSLLNDDQLYNVVVTAHGFIMIFFMVMPIMIGGFGNW 65
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
LVPL+LGAPD+AFPR+NN+ F + G + PL G
Sbjct: 66 LVPLMLGAPDMAFPRMNNMSFGFFPLHWHYYSFFTV--KGGLARDELSTPLYLVTISAGP 123
Query: 417 SVDLAIFSLHLAGISS 464
SVDLAIF LHLAG+SS
Sbjct: 124 SVDLAIFPLHLAGVSS 139
>UniRef50_A6C5X9 Cluster: Cytochrome caa3 oxidase; n=3;
Bacteria|Rep: Cytochrome caa3 oxidase - Planctomyces
maris DSM 8797
Length = 754
Score = 105 bits (251), Expect = 1e-21
Identities = 66/219 (30%), Positives = 95/219 (43%)
Frame = +3
Query: 78 IGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
+G +LL+R +L P + + +++N + T H N VPL++G
Sbjct: 49 VGGFEALLMRIQLAFPNNTFLSPEMFNQLFTMHGTTMVFLVGMPVLTGFA-NYFVPLMIG 107
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
A D+AFPR+N+ F + + G Y PLSS + VD I
Sbjct: 108 ARDVAFPRLNSFGFWMFFFGAALLHFSFLTGSAPNAGWFSYVPLSSKAYSSLQGVDYWII 167
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
L + GI S S ++PLFV + + A A+ +
Sbjct: 168 GLLIMGIGSVSGAINIFATIINLRAPGMSLQRVPLFVWMMLMQAILIILALPALNSALAM 227
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
LL DR L ++FFDP GG +L+QH F GHPEVYILI
Sbjct: 228 LLIDRWLGSAFFDPTRGGSAVLWQHYFWIFGHPEVYILI 266
>UniRef50_Q06473 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1);
n=59; Cyanobacteria|Rep: Cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Oxidase aa(3) subunit 1) -
Synechocystis sp. (strain PCC 6803)
Length = 551
Score = 105 bits (251), Expect = 1e-21
Identities = 71/219 (32%), Positives = 93/219 (42%)
Frame = +3
Query: 78 IGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
IG S + +R EL P ++YN ++T H N L+PL++G
Sbjct: 44 IGGSFAEAMRTELATPSPDFVQPEMYNQLMTLHGTIMIFLWIVPAGAAFA-NYLIPLMVG 102
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
D+AFPR+N + F V G T YPPLS G +L I
Sbjct: 103 TEDMAFPRLNAVAFWLTPPGGILLISSFFV-GAPQAGWTSYPPLSLLSGKWGE--ELWIL 159
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
SL L G SS +PLF A+ T+ A A+ +
Sbjct: 160 SLLLVGTSSILGAINFVTTILKMRIKDMDLHSMPLFCWAMLATSSLILLSTPVLASALIL 219
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
L D TSFF+P GGGDP++YQHLF F HP VYI+I
Sbjct: 220 LSFDLIAGTSFFNPVGGGDPVVYQHLFWFYSHPAVYIMI 258
>UniRef50_Q98P35 Cluster: Cytochrome C oxidase subunit I; n=16;
cellular organisms|Rep: Cytochrome C oxidase subunit I -
Rhizobium loti (Mesorhizobium loti)
Length = 623
Score = 103 bits (248), Expect = 3e-21
Identities = 67/218 (30%), Positives = 94/218 (43%)
Frame = +3
Query: 78 IGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
+G L+LL+R +L P + YN I T H LVPL++G
Sbjct: 46 LGGVLALLMRLQLAQPEARFIGPDRYNQIFTMHGSNMMFLFAVPVMQAMAIY-LVPLMVG 104
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
IAFPR+N + V+ G G Y PLS G+ D+
Sbjct: 105 TRHIAFPRLNAFSYWMYLAGGLLLWIAFAVDTGPDIGWFAYVPLSGPQYAAGKRADIWAQ 164
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
+ +S+ S D++PLFV ++ +T+F A T
Sbjct: 165 MITFTEVSALAIAVEIVVTVFKQRAPGMSLDRIPLFVWSMLVTSFLVILAMPAIMIASTS 224
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
L+ DR + T FF+PA GGD +L+QHLF F GHPEVYI+
Sbjct: 225 LILDRLVGTHFFNPAEGGDVLLWQHLFWFFGHPEVYII 262
>UniRef50_A7H8L4 Cluster: Cytochrome c oxidase subunit I type; n=38;
Bacteria|Rep: Cytochrome c oxidase subunit I type -
Anaeromyxobacter sp. Fw109-5
Length = 555
Score = 103 bits (247), Expect = 5e-21
Identities = 65/219 (29%), Positives = 94/219 (42%)
Frame = +3
Query: 78 IGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
+G +LLIR EL PG I YN + T H N L+P+++G
Sbjct: 52 LGGFFALLIRLELLTPGPTIMDAMTYNRMFTLHGVVMIFLFMIPAIPSGFGNFLLPIMIG 111
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
A D+AFP++N + F +V+ GA TG T Y P S+ + V L F
Sbjct: 112 AKDVAFPKLNLLSFYVYLAGAVVALFG-MVQGGADTGWTFYTPYSTTTITKVVPVLLGAF 170
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
L G SS + +LPLFV ++ T+ ++ +
Sbjct: 171 IL---GFSSILTGLNFIVTTHTMRAPGMGWTRLPLFVWSIYATSVIQILATPVLGMSLLL 227
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+ + FDPA GGDP+L+QH F F HP VYI++
Sbjct: 228 VAVEHAFGWGIFDPARGGDPVLFQHFFWFYSHPAVYIMV 266
>UniRef50_Q0I8U1 Cluster: Cytochrome c oxidase subunit I; n=16;
Bacteria|Rep: Cytochrome c oxidase subunit I -
Synechococcus sp. (strain CC9311)
Length = 564
Score = 103 bits (246), Expect = 6e-21
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 3/223 (1%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G L++++R EL P + + +YN + T H N L+P ++
Sbjct: 52 LVGGLLAMIVRGELITPPADLVDPSVYNGLYTMHGTVMLFLFLFPILNGFN-NLLIPTMI 110
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPPLS--SNIAHRGRSVD 425
GAPD+AFP++N F G A +G YPP+S + + H
Sbjct: 111 GAPDMAFPKLNAAAFWLVPVFSIVLMGSFFAPGGPASSGWWSYPPMSLQNPLGHFINGEF 170
Query: 426 LAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG 605
L I ++ L+GISS F ++P+FV G
Sbjct: 171 LWILAVALSGISSIMGAINFVTTIIRMRAPGMGFFRMPVFVWTAWAAQTIQLIGLPALTG 230
Query: 606 AITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+LL D + TSFF P GGGDP+L+QH F F HP VY+L+
Sbjct: 231 GAVMLLFDLSFGTSFFRPEGGGDPVLFQHFFWFYSHPAVYVLV 273
>UniRef50_O67935 Cluster: Cytochrome c oxidase subunit I; n=1;
Aquifex aeolicus|Rep: Cytochrome c oxidase subunit I -
Aquifex aeolicus
Length = 485
Score = 102 bits (245), Expect = 8e-21
Identities = 62/204 (30%), Positives = 90/204 (44%)
Frame = +3
Query: 123 PGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFX 302
PG + + YN ++T H N L+PL++GA D+AFPR+N + +
Sbjct: 2 PGMQVVDFKTYNYLLTGHGVGMLFWWAIAAHIGGFGNFLLPLMIGAKDVAFPRLNALSWW 61
Query: 303 XXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 482
I N T T YPP S N + L +F +HL G SS
Sbjct: 62 AFFAANVLFLMTLIPGNHIMTMWTGYPPFSLN--NDAGVTALYVFVMHLLGASSIATAVN 119
Query: 483 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 662
+F + LFV + AGA+T+L D+ L T+FF+PA
Sbjct: 120 FLVTYITMRAPGYTFFKTNLFVHTLIAANVIQLVGVPSLAGAVTMLFLDKYLGTNFFNPA 179
Query: 663 GGGDPILYQHLF*FXGHPEVYILI 734
GGDP++YQ++F F HP VY+ +
Sbjct: 180 KGGDPLIYQNIFWFYSHPVVYVQV 203
>UniRef50_A5UVJ0 Cluster: Cytochrome-c oxidase; n=2;
Roseiflexus|Rep: Cytochrome-c oxidase - Roseiflexus sp.
RS-1
Length = 641
Score = 102 bits (244), Expect = 1e-20
Identities = 68/220 (30%), Positives = 93/220 (42%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+IG +LL+R +LG P + +YN + T H N +VPL++
Sbjct: 47 LIGGIEALLMRIQLGVPDNTFLTPDVYNQMFTMHGTTMIFLGLMPLNVGLG-NYMVPLMI 105
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GA D+AFPR+N + V G Y PL+ VD I
Sbjct: 106 GARDMAFPRLNALSIWLFIFGGLMLYVSFFVGGAPNVGWFAYAPLTQKQFAPTAGVDYWI 165
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ L G++S + +++PLFV + AF A
Sbjct: 166 VGIGLTGVASIAGALNFIVTILNMRAPGMTLNRMPLFVWMQLVVAFILIFAFPVLTVATI 225
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
LL DR+ T FF P GGD +L+QHLF F GHPEVYILI
Sbjct: 226 QLLFDRHFGTRFFLPNLGGDAVLWQHLFWFFGHPEVYILI 265
>UniRef50_Q79VD7 Cluster: Cytochrome c oxidase subunit 1; n=93;
Actinobacteria (class)|Rep: Cytochrome c oxidase subunit
1 - Corynebacterium glutamicum (Brevibacterium flavum)
Length = 584
Score = 100 bits (239), Expect = 4e-20
Identities = 66/219 (30%), Positives = 94/219 (42%), Gaps = 1/219 (0%)
Frame = +3
Query: 78 IGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
+G ++LLIRAEL PG + + +N + T H N ++PL +G
Sbjct: 55 LGGLMALLIRAELFTPGLQFLSNEQFNQLFTMHGTVMLLLYGTPIVWGFA-NYVLPLQIG 113
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGT-G*TVYPPLSSNIAHRGRSVDLAI 434
APD+AFPR+N F + GA G T+Y PLS I G D+ I
Sbjct: 114 APDVAFPRLNAFGFWITTVGGVAMLTGFLTPGGAADFGWTMYSPLSDAIHSPGLGSDMWI 173
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ GI S + ++P+F + + + A
Sbjct: 174 VGVGATGIGSVASAINMLTTILCLRAPGMTMFRMPIFTWNIFVVSVLALLIFPLLLAAAL 233
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
+L DR L +DPA GG +L+QHLF F GHPEVY+L
Sbjct: 234 GVLYDRKLGGHLYDPANGGS-LLWQHLFWFFGHPEVYVL 271
>UniRef50_P33518 Cluster: Cytochrome c oxidase polypeptide 1; n=4;
Halobacteriaceae|Rep: Cytochrome c oxidase polypeptide 1
- Halobacterium salinarium (Halobacterium halobium)
Length = 593
Score = 99 bits (238), Expect = 6e-20
Identities = 65/215 (30%), Positives = 96/215 (44%), Gaps = 2/215 (0%)
Frame = +3
Query: 96 LLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 275
LL+R EL + + +YN ++T+H N +PL++ A D+AF
Sbjct: 91 LLMRTELATSSETLISPSLYNGLLTSHGITMLFLFGTPMIAAFG-NYFIPLLIDADDMAF 149
Query: 276 PRINNIRFXXXXXXXXXXXXXXIVEN--GAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 449
PRIN I F ++ A T T+Y PLS ++ +VD+ + LHL
Sbjct: 150 PRINAIAFWLLPPGAILIWSGFLIPGIATAQTSWTMYTPLSLQMS--SPAVDMMMLGLHL 207
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 629
G+S+ + L +F + + A+ +LL D
Sbjct: 208 TGVSATMGAINFIATIFTERGEDVGWPDLDIFSWTMLTQSGLILFAFPLFGSALIMLLLD 267
Query: 630 RNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
RN T+FF AGG DPI +QHLF F GHPEVY+L+
Sbjct: 268 RNFGTTFFTVAGG-DPIFWQHLFWFFGHPEVYVLV 301
>UniRef50_Q9YDX6 Cluster: Heme-copper oxidase subunit I+III; n=1;
Aeropyrum pernix|Rep: Heme-copper oxidase subunit I+III
- Aeropyrum pernix
Length = 815
Score = 99 bits (238), Expect = 6e-20
Identities = 69/222 (31%), Positives = 97/222 (43%), Gaps = 2/222 (0%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+I SL+LL R +L P S Y VT H N +VPL +
Sbjct: 37 LIAGSLALLFRVQLAIPKSNFLTGDAYYEAVTVHGLIMLLWFASPFAFGLA-NYIVPLQI 95
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLA 431
GA D+AFPR+N + + E+GA G T+Y PL++ I G +DLA
Sbjct: 96 GARDLAFPRLNALSYWLYLLSGLVLLASFFTESGAPNVGWTLYAPLTARIYTPGIGLDLA 155
Query: 432 IFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAI 611
++ L +S + ++P+F ++ T
Sbjct: 156 ALAIFLFSLSVTLGTINFLVTIAAMRAPGIGWFKMPMFTWSILFTVILMLWAFPPLMVGG 215
Query: 612 TILLTDRNLNTSFF-DPAGGGDPILYQHLF*FXGHPEVYILI 734
+LL DRNL T FF +PAGG +L+ HLF F GHPEVYIL+
Sbjct: 216 ALLLLDRNLGTEFFLNPAGGA--LLWDHLFWFFGHPEVYILL 255
>UniRef50_P98005 Cluster: Cytochrome c oxidase polypeptide I+III (EC
1.9.3.1) (Cytochrome c aa(3) subunit 1); n=2; Thermus
thermophilus|Rep: Cytochrome c oxidase polypeptide I+III
(EC 1.9.3.1) (Cytochrome c aa(3) subunit 1) - Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
Length = 791
Score = 97.1 bits (231), Expect = 4e-19
Identities = 61/215 (28%), Positives = 90/215 (41%), Gaps = 1/215 (0%)
Frame = +3
Query: 93 SLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIA 272
SLLIR +L P + + YN I+T H N +VPL+LGA D+A
Sbjct: 46 SLLIRTQLAVPNNQFLTGEQYNQILTLHGATMLFFFIIQAGLTGFGNFVVPLMLGARDVA 105
Query: 273 FPRINNIRFXXXXXXXXXXXXXXIVENGA-GTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 449
PR+N + GA G T Y P S A VD + ++ L
Sbjct: 106 LPRVNAFSYWAFLGAIVLALMSYFFPGGAPSVGWTFYYPFS---AQSESGVDFYLAAILL 162
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 629
G SS S ++P++V +V + A ++L +
Sbjct: 163 LGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLE 222
Query: 630 RNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
R + S+F+PA GGDP+L+Q F F HP VY+++
Sbjct: 223 RKIGLSWFNPAVGGDPVLFQQFFWFYSHPTVYVML 257
>UniRef50_Q8HCX2 Cluster: Cytochrome c oxidase subunit I; n=1;
Aplidium nordmanni|Rep: Cytochrome c oxidase subunit I -
Aplidium nordmanni
Length = 227
Score = 94.3 bits (224), Expect = 3e-18
Identities = 71/208 (34%), Positives = 83/208 (39%)
Frame = +3
Query: 81 GTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGA 260
G L R L G +IG QI VTA A L PL +GA
Sbjct: 20 GXXFXLXXRXXLSXXGQVIGXGQIXXVGVTAXALVMIFFFVMPTLXGGFGXXLXPLXVGA 79
Query: 261 PDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFS 440
P +A PR+ N+ F + G G VYPP SS +AH +VDL IF
Sbjct: 80 PXMAXPRLXNMSFWLLPPSLXXLCLSVFIGXGVGXXWXVYPPXSSGLAHSSGAVDLGIFX 139
Query: 441 LHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITIL 620
LHLAGISS ++ LF A AIT+L
Sbjct: 140 LHLAGISSXLGSMNFLVTLGNMKXKGLNYGNFSLFCWXXVXXXXXLILSXPVLAAAITML 199
Query: 621 LTDRNLNTSFFDPAGGGDPILYQHLF*F 704
R N SFF P G P + F F
Sbjct: 200 XXXRXXNXSFFXPXXXGXPXXFPTFFXF 227
>UniRef50_A0RZ19 Cluster: Heme/copper-type cytochrome/quinol
oxidase, subunit 1; n=2; Thermoprotei|Rep:
Heme/copper-type cytochrome/quinol oxidase, subunit 1 -
Cenarchaeum symbiosum
Length = 508
Score = 91.9 bits (218), Expect = 1e-17
Identities = 69/220 (31%), Positives = 97/220 (44%), Gaps = 1/220 (0%)
Frame = +3
Query: 78 IGTSLSLLIRAELGNPGS-LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+G +L+LLIRAEL PG+ I +N + T H N VP+++
Sbjct: 37 LGGALALLIRAELFFPGTQFIADSMTFNRMFTVHGTTLIFLFILPFASAVG-NYFVPIMV 95
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
D+A+P++N I F + T PP S I+ G + D+ I
Sbjct: 96 RYKDMAYPKLNAIAFWMIPPAGALVWLGFADFSWYAT-----PPYSV-ISAPGPAADMWI 149
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
F L + GISS S Q+PL + ++ A A+
Sbjct: 150 FGLKILGISSILGSINFIVTILKCKHPDMSLGQVPLLAWSYLSSSLIVLVALPTFAAALL 209
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+LLTDR + FF+PA GGDPI Y HLF F HPEVY+L+
Sbjct: 210 MLLTDRLGVSGFFNPAVGGDPIAYAHLFWFTFHPEVYVLV 249
>UniRef50_P24010 Cluster: Cytochrome c oxidase subunit 1 (EC
1.9.3.1) (Cytochrome c oxidase polypeptide I)
(Cytochrome aa3 subunit 1) (Caa-3605 subunit 1) (Oxidase
aa(3) subunit 1); n=13; Bacillaceae|Rep: Cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Cytochrome c oxidase
polypeptide I) (Cytochrome aa3 subunit 1) (Caa-3605
subunit 1) (Oxidase aa(3) subunit 1) - Bacillus subtilis
Length = 622
Score = 91.5 bits (217), Expect = 2e-17
Identities = 54/220 (24%), Positives = 94/220 (42%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G ++ IR +L P + + Q YN ++T H N +VPL +
Sbjct: 40 LVGGIEAMFIRIQLAKPENAFLSAQAYNEVMTMHGTTMIFLAAMPLLFALM-NAVVPLQI 98
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GA D++FP +N + F + G T Y LS + +G +D +
Sbjct: 99 GARDVSFPFLNALGFWLFFFGHIFLNLSWFLGGAPDAGWTSYASLS--LHSKGHGIDFFV 156
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
L ++G+ + ++ +LPLF + + +
Sbjct: 157 LGLQISGLGTLIAGINFLATIINMRAPGMTYMRLPLFTWTTFVASALILFAFPPLTVGLA 216
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+++ DR T+FF+P GG+ ++++HLF GHPEVYILI
Sbjct: 217 LMMLDRLFGTNFFNPELGGNTVIWEHLFWIFGHPEVYILI 256
>UniRef50_A3SJL2 Cluster: QoxA, Quinol oxidase subunit I; n=2;
Rhodobacteraceae|Rep: QoxA, Quinol oxidase subunit I -
Roseovarius nubinhibens ISM
Length = 818
Score = 90.2 bits (214), Expect = 5e-17
Identities = 59/219 (26%), Positives = 89/219 (40%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G L++LIRA+L P S + YN + T H L+P +L
Sbjct: 45 VVGGVLAMLIRAQLATPRSAFLGPEHYNQVFTMHGTIMMFLFAIPVFEGFAVY-LLPKLL 103
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
G+ D+AFPR+ F + +G +YPPLSS + G + D +
Sbjct: 104 GSRDLAFPRLTAYGFWCYVFGGSMMIFSLLWGIAPDSGWFMYPPLSSTLGAPGINSDFWL 163
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ IS+ S ++P+F +TA
Sbjct: 164 IGITFVEISAIAAAVEITVTVLRYRAPGMSLSKMPIFAWYALVTAVMILTGFPPLILGSI 223
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
+L +R + FF A GGD +L+QHLF GHPEVYI+
Sbjct: 224 LLELERAFDMPFFQAAAGGDALLWQHLFWLFGHPEVYII 262
>UniRef50_P98000 Cluster: Alternative cytochrome c oxidase subunit 1
(EC 1.9.3.1) (Alternative cytochrome c oxidase
polypeptide I) (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=25; Bacteria|Rep: Alternative cytochrome c
oxidase subunit 1 (EC 1.9.3.1) (Alternative cytochrome c
oxidase polypeptide I) (Cytochrome BB3 subunit 1)
(Oxidase BB(3) subunit 1) - Bradyrhizobium japonicum
Length = 591
Score = 89.4 bits (212), Expect = 8e-17
Identities = 73/236 (30%), Positives = 99/236 (41%), Gaps = 16/236 (6%)
Frame = +3
Query: 72 GIIGTSLSLLIRAELGNPG--SLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVP 245
G++ LS L+R +LG PG S I A Q Y +T H N L+P
Sbjct: 53 GLVALVLSWLMRLQLGFPGTFSFIDANQ-YLQFITMHGMIMVIYLLTALFLGGFGNYLIP 111
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENG-AGTG*TVYPP--LSSNIAHRGR 416
L++GA D+ FP +N + + V G G G T+YPP + S +
Sbjct: 112 LMVGARDMVFPYVNMLSYWVYLLAVLVLASAFFVPGGPTGAGWTLYPPQAILSGTPGQDW 171
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AV-GITAFXXXXXXX 593
+ L + SL L I + +LPL V + T
Sbjct: 172 GIVLMLSSLILFIIGFTMGGLNYVVTVLQARTRGMTLMRLPLTVWGIFTATVMALLAFPA 231
Query: 594 XXAGAITILLTDRNLNTSFFDPA----------GGGDPILYQHLF*FXGHPEVYIL 731
G++ +LL DR L TSFF P GGG P+L+QHLF F GHPEVYI+
Sbjct: 232 LFVGSVMLLL-DRLLGTSFFMPTLVEMGQLSKYGGGSPLLFQHLFWFFGHPEVYIV 286
>UniRef50_Q8ZXD1 Cluster: Cytochrome C oxidase subunit I /III; n=4;
cellular organisms|Rep: Cytochrome C oxidase subunit I
/III - Pyrobaculum aerophilum
Length = 800
Score = 88.6 bits (210), Expect = 1e-16
Identities = 57/174 (32%), Positives = 80/174 (45%), Gaps = 6/174 (3%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIV-ENGAGTG*TVYPPLSSNIAH 407
N LVP ++GAPD+ +PRIN + F + ++G G T+YPPLS+
Sbjct: 86 NILVPKLIGAPDMYWPRINALSFWMQVPATVFMWSSLLFWQHGDSIGWTLYPPLST--IS 143
Query: 408 RGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXX 587
+ VDL + + +AG SS + LF +V +
Sbjct: 144 KSIGVDLILLGIIIAGFSSTLTGINFILTITRLRRPDIKMLDMSLFAWSVLAASMLMVTA 203
Query: 588 XXXXAGAITILLTDRNLNTSFF-----DPAGGGDPILYQHLF*FXGHPEVYILI 734
A +LL +R+L FF DPA GDP L+QH+F F GHPEVYIL+
Sbjct: 204 LPPLAAGAIMLLLERHLGMHFFTPVPGDPAASGDPRLFQHIFWFFGHPEVYILV 257
>UniRef50_A3ZTG1 Cluster: Cytochrome c oxidase subunit I; n=1;
Blastopirellula marina DSM 3645|Rep: Cytochrome c
oxidase subunit I - Blastopirellula marina DSM 3645
Length = 595
Score = 88.2 bits (209), Expect = 2e-16
Identities = 63/213 (29%), Positives = 90/213 (42%), Gaps = 15/213 (7%)
Frame = +3
Query: 141 AXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXX 320
A + Y +VT HA N L+PL++GA D+AFP +N + +
Sbjct: 84 APEFYTVLVTMHATVMIFLVIIPILAGAFGNFLIPLMIGADDMAFPTLNMLSYWFMWPAF 143
Query: 321 XXXXXXXIVE-NGAGTG*TVYPPLS---SNIAHRGRSVDLAIFSLHLAGISSXXXXXXXX 488
+ +GA G T YPPLS ++ G + L + + G+SS
Sbjct: 144 FFFGGAFFCDGHGAAAGWTSYPPLSDMTTSAPSSGAAQTLWLLGVTTVGVSSMLGSVNYM 203
Query: 489 XXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP--- 659
+ +LPL + A+ ITA A ++L DR + T FF P
Sbjct: 204 TTIIQMRAPGMTMFRLPLTIWAMFITALLQAFALPVLTAAGFMMLADRLIGTGFFLPEGL 263
Query: 660 --------AGGGDPILYQHLF*FXGHPEVYILI 734
AGGG P+L+QHLF F HP VYI+I
Sbjct: 264 VVNNSPMAAGGGQPLLWQHLFWFYSHPAVYIMI 296
>UniRef50_A0VUI8 Cluster: Cytochrome-c oxidase; n=1; Dinoroseobacter
shibae DFL 12|Rep: Cytochrome-c oxidase -
Dinoroseobacter shibae DFL 12
Length = 853
Score = 88.2 bits (209), Expect = 2e-16
Identities = 58/219 (26%), Positives = 90/219 (41%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+I +LL+R +L P + + + YN + T H L+PL++
Sbjct: 71 LIAGVFALLVRLQLMVPENTFLSSETYNQLFTMHGTIMMFLFAIPMLEGFAVY-LIPLMI 129
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GA D+ FPR+ + + + G +Y PLS++ G S D +
Sbjct: 130 GARDLVFPRLGAFGYYCYLFGGIIVLSSFLFDAAPDGGWFMYVPLSTSAYTEGLSADFWL 189
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ LA I+S S ++P+ + + TAF
Sbjct: 190 IGITLAEIASVTAAVEIIAAILCSRAPGMSLTKMPILMWYLLATAFMIAIAFPPLIIGSI 249
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
+L +R L FFD GGDP+L+QHLF GHPEVYI+
Sbjct: 250 LLEAERLLGLPFFDHTLGGDPLLWQHLFWLFGHPEVYII 288
>UniRef50_P34956 Cluster: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1); n=45;
Bacillales|Rep: Quinol oxidase subunit 1 (EC 1.10.3.-)
(Quinol oxidase polypeptide I) (Quinol oxidase aa3-600,
subunit qoxB) (Oxidase aa(3)-600 subunit 1) - Bacillus
subtilis
Length = 649
Score = 88.2 bits (209), Expect = 2e-16
Identities = 59/213 (27%), Positives = 85/213 (39%)
Frame = +3
Query: 96 LLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAF 275
L++RA+L P + YN I T H N +VPL +GA D+AF
Sbjct: 76 LMMRAQLALPNNSFLDSNHYNEIFTTHGTIMIIFMAMPFLIGLI-NVVVPLQIGARDVAF 134
Query: 276 PRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAG 455
P +NN+ F ++ G T Y PL+SN G + + L +AG
Sbjct: 135 PYLNNLSFWTFFVGAMLFNISFVIGGSPNAGWTSYMPLASNDMSPGPGENYYLLGLQIAG 194
Query: 456 ISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRN 635
I + + ++P+F IT A+ +L DR
Sbjct: 195 IGTLMTGINFMVTILKMRTKGMTLMRMPMFTWTTLITMVIIVFAFPVLTVALALLSFDRL 254
Query: 636 LNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
FF GG P+L+ +LF GHPEVYI+I
Sbjct: 255 FGAHFFTLEAGGMPMLWANLFWIWGHPEVYIVI 287
>UniRef50_A7BSH8 Cluster: Cytochrome c oxidase aa3, subunit 1; n=1;
Beggiatoa sp. PS|Rep: Cytochrome c oxidase aa3, subunit
1 - Beggiatoa sp. PS
Length = 525
Score = 87.0 bits (206), Expect = 4e-16
Identities = 62/216 (28%), Positives = 91/216 (42%), Gaps = 2/216 (0%)
Frame = +3
Query: 90 LSLLIRAELGNPGSLIGAX-QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPD 266
+++LIR EL G I +YNT + H N +PL++GA D
Sbjct: 35 MAMLIRLELSQIGPTITDDPSVYNTWLYFHGAAMILAFQIPALTGFFANYFIPLMIGAKD 94
Query: 267 IAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLH 446
+AFPR+N + + + T YPP S I H + FS+
Sbjct: 95 VAFPRVNALSVWLFYAGVLVALTTFFIPDPPDIMWTGYPPYSI-ITHGNTA--FYTFSVL 151
Query: 447 LAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAG-AITILL 623
L G +S +++L +FV A + AF G A+T+L
Sbjct: 152 LLGFASILGGVNFLTTVTFMRAPGIGWNKLNIFVWAT-LAAFVLQLIFVPVLGTAVTMLT 210
Query: 624 TDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
D+ + T FFD A GGD + YQ+LF F HP VY++
Sbjct: 211 FDKYIGTHFFDAAAGGDALTYQNLFWFYSHPAVYVI 246
>UniRef50_Q1H1C1 Cluster: Cytochrome-c oxidase; n=1; Methylobacillus
flagellatus KT|Rep: Cytochrome-c oxidase -
Methylobacillus flagellatus (strain KT / ATCC 51484 /
DSM 6875)
Length = 631
Score = 86.2 bits (204), Expect = 7e-16
Identities = 60/219 (27%), Positives = 89/219 (40%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
I+G L+LL+R +L P + + YN + + H ++PL+L
Sbjct: 52 ILGVILALLMRLQLAVPENDFMDPETYNQVFSMHGITMMFLFAIPVMEGFAVY-IIPLML 110
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
G D+ FPR+N + ++ G YPPL+ G +D
Sbjct: 111 GTRDMTFPRLNAFGYYIYLIAGVMMYAALLLRIAPDAGWFSYPPLAGASFSPGLGLDFYT 170
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ IS+ S +++P+FV AV + +F A
Sbjct: 171 TVVTFMEISALVAAIELIATIFKCKVPGMSLNRMPIFVWAVLVMSFMIVFALPPLVIASL 230
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
+L DR FF A GDPIL+QHLF F GHPEVYI+
Sbjct: 231 MLALDRMAGMHFFT-AASGDPILWQHLFWFFGHPEVYII 268
>UniRef50_Q9Z605 Cluster: Quinol oxidase subunit I; n=15;
Proteobacteria|Rep: Quinol oxidase subunit I -
Rhodobacter sphaeroides (Rhodopseudomonas sphaeroides)
Length = 825
Score = 85.8 bits (203), Expect = 1e-15
Identities = 57/219 (26%), Positives = 90/219 (41%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+IG L++LIRA+L +P S + Y + T H L+P +L
Sbjct: 45 LIGGILAMLIRAQLASPRSAFVGAETYAQLFTMHGTIMMFLFAIPMFEGLTIY-LLPKML 103
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
G+ D+A+PR++ F + +G +YPPL+S + G + D +
Sbjct: 104 GSRDLAYPRLSAYGFWCYVLGGSMLIVALLAGIAPDSGWFMYPPLASTLGSPGINSDFWL 163
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ IS+ S D++P++ +TA
Sbjct: 164 LGITFVEISAIAAAVEIVVTVLRFRAPGMSLDRMPIYGWYALVTATMILTGFPPLILGSI 223
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
+L +R FF A GGD +L+QHLF GHPEVYI+
Sbjct: 224 LLELERAFGLPFFQVAEGGDSLLWQHLFWLFGHPEVYII 262
>UniRef50_A0TRU9 Cluster: Cytochrome-c oxidase; n=30;
Proteobacteria|Rep: Cytochrome-c oxidase - Burkholderia
cenocepacia MC0-3
Length = 1004
Score = 83.4 bits (197), Expect = 5e-15
Identities = 57/220 (25%), Positives = 90/220 (40%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G +L++R +L P + + Y+++ T H N L PL+L
Sbjct: 65 LLGGVEALVMRIQLARPNATVLTPAQYDSLFTMHGVTMIFLYALPVLSGFA-NYLWPLML 123
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
G+ D+AFPR+ + + G Y PL+S G ++D+
Sbjct: 124 GSRDMAFPRLTAFSYWSFLFAGLFLYASFPLGAVPDGGWFNYVPLTSLDYSAGANIDIYG 183
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ L GIS+ S D+LP+ V + + A
Sbjct: 184 LGMILLGISTTGGAANFVVTLLRMRAHGMSIDRLPIIVWGTLTASVSNLVAVPSVSLAFL 243
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+L DRN T FFD A GG P+L+QHLF HP VY+++
Sbjct: 244 LLWLDRNAGTHFFDVAHGGRPLLWQHLFWMFAHPWVYVVV 283
>UniRef50_Q0H8X8 Cluster: Probable intron-encoded endonuclease aI2
precursor [Contains: Truncated non-functional cytochrome
oxidase 1; Intron-encoded endonuclease aI2 (EC
3.1.-.-)]; n=2; Ustilago maydis|Rep: Probable
intron-encoded endonuclease aI2 precursor [Contains:
Truncated non-functional cytochrome oxidase 1;
Intron-encoded endonuclease aI2 (EC 3.1.-.-)] - Ustilago
maydis (Smut fungus)
Length = 533
Score = 83.4 bits (197), Expect = 5e-15
Identities = 49/117 (41%), Positives = 62/117 (52%), Gaps = 2/117 (1%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ + + +IGT+ S+LIR EL PG L G Q+YN I+TAHA
Sbjct: 20 FAVFAAMIGTAFSVLIRMELAAPGVQYLNGDHQLYNVIITAHAFVMIFFMVMPAMVGGFG 79
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
N LVP+++GAPD+AFPR+NNI F VE GAGTG TV LS I
Sbjct: 80 NYLVPVMIGAPDMAFPRLNNISFWLLPPSLILLLASAFVEQGAGTGWTVKCKLSQII 136
>UniRef50_Q35061 Cluster: CoxI intron4 ORF; n=3; Marchantia
polymorpha|Rep: CoxI intron4 ORF - Marchantia polymorpha
(Liverwort)
Length = 434
Score = 81.0 bits (191), Expect = 3e-14
Identities = 42/109 (38%), Positives = 59/109 (54%), Gaps = 2/109 (1%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLI--GAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+G +G++GT S+LIR EL PG+ I G Q+YN ++TAHA
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYNVLITAHAFLMIFFMVMPAMIGGFG 83
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
N VP+++G+PD+AFPR+NNI F +VE G G+G TV
Sbjct: 84 NWFVPILIGSPDMAFPRLNNISFWLLPPSLLLLLSSALVEVGCGSGWTV 132
>UniRef50_Q3L2S5 Cluster: Cytochrome c oxidase subunit I; n=1; Aedes
cretinus|Rep: Cytochrome c oxidase subunit I - Aedes
cretinus
Length = 153
Score = 81.0 bits (191), Expect = 3e-14
Identities = 39/65 (60%), Positives = 45/65 (69%)
Frame = +3
Query: 246 LILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVD 425
L+LGAPD+AFPR+NN+ F +VENGAGTG TVYPPLSS AH G SVD
Sbjct: 1 LMLGAPDMAFPRMNNMSFWMLPPSLTLLLSSSMVENGAGTGWTVYPPLSSGTAHAGASVD 60
Query: 426 LAIFS 440
LAI+S
Sbjct: 61 LAIYS 65
Score = 55.2 bits (127), Expect = 2e-06
Identities = 28/56 (50%), Positives = 31/56 (55%)
Frame = +2
Query: 545 CMSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFILIFXT 712
CM C +Y TCFS S+Y IIN K KY IF W P +STFILIF T
Sbjct: 97 CMICCNYCYFITSFFTCFSSSHYYIINWPKSKYFIFWPNWSSSPYSLSTFILIFWT 152
>UniRef50_A1ZL77 Cluster: Alternative Cytochrome c oxidase
polypeptide I (Cytochrome BB3 subunit 1) (Oxidase BB(3)
subunit 1); n=20; cellular organisms|Rep: Alternative
Cytochrome c oxidase polypeptide I (Cytochrome BB3
subunit 1) (Oxidase BB(3) subunit 1) - Microscilla
marina ATCC 23134
Length = 635
Score = 80.6 bits (190), Expect = 4e-14
Identities = 73/255 (28%), Positives = 107/255 (41%), Gaps = 30/255 (11%)
Frame = +3
Query: 60 GLXSGIIGTSLSLLIRAELGNP------------GSLIGAXQI----YNTIVTAHAXXXX 191
G+ +IG +SL+ R +LG P G + A ++ Y +VT H
Sbjct: 55 GIFWAVIGGLMSLVFRLQLGFPEMSMEFLRPILGGWITEAGKLEPEFYLALVTMHGTIMV 114
Query: 192 XXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG- 368
N L+PL +GA D+A +N + + +E G +G
Sbjct: 115 FFVLTAGLSGTFSNFLIPLQIGARDMASGFMNMLSYWFFFGSSVIMFASIFLETGPASGS 174
Query: 369 *TVYPPLSS---NIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLP 539
+YPPLS+ ++ G + + + S+ L IS SF +LP
Sbjct: 175 WVIYPPLSALPQAMSGSGAGMTMWLISMALFIISVLLGGINYITTVINLRVKGMSFTRLP 234
Query: 540 LFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDP----AG------GGDPILYQ 689
L + A ITA A +L+ DR+L TSFF AG GG P+L+Q
Sbjct: 235 LTIWAFFITAIIGLLSFPVLFSAALLLIFDRSLGTSFFLSEIYIAGEALHHQGGSPVLFQ 294
Query: 690 HLF*FXGHPEVYILI 734
HLF F GHPEVYI++
Sbjct: 295 HLFWFLGHPEVYIVL 309
>UniRef50_Q67ML1 Cluster: Cytochrome C oxidase subunit I; n=17;
Bacteria|Rep: Cytochrome C oxidase subunit I -
Symbiobacterium thermophilum
Length = 628
Score = 79.4 bits (187), Expect = 8e-14
Identities = 57/224 (25%), Positives = 89/224 (39%), Gaps = 4/224 (1%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++G + ++R +L PG + + +N + T HA N +PL++
Sbjct: 45 LVGGLEAWIMRLQLARPGLEVVTARTFNALFTMHATTMIFLGVMPLLSAFM-NYFLPLMI 103
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAG----TG*TVYPPLSSNIAHRGRSV 422
GA D+AFPR+N + ++ G G Y L+S G
Sbjct: 104 GARDVAFPRLNAFSYWIYLFGALFINAGWLMGTAGGHVPDIGWFGYANLTSVQFTSGLGP 163
Query: 423 DLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXA 602
D L L GI + + ++P+FV +T+
Sbjct: 164 DFWTLGLLLLGIGTLVSGFNFIVTILNMRAPGMTLMKMPVFVWTTLVTSAIIIFAFPSVT 223
Query: 603 GAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A+ +L+ DR +FF+ GG + YQHLF GHPEVYILI
Sbjct: 224 VALIMLMFDRTFAANFFEVLRGGSVVFYQHLFWTFGHPEVYILI 267
>UniRef50_Q9B6E4 Cluster: COX1-i3 protein; n=2; Yarrowia
lipolytica|Rep: COX1-i3 protein - Yarrowia lipolytica
(Candida lipolytica)
Length = 457
Score = 79.4 bits (187), Expect = 8e-14
Identities = 48/117 (41%), Positives = 60/117 (51%), Gaps = 2/117 (1%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ L S +IGT LS +IR EL N GS L G Q +N ++TAHA
Sbjct: 26 FALFSAMIGTGLSAIIRLELANTGSPFLHGNTQAFNVVITAHAILMIFFFVMPALVGGFG 85
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNI 401
N L+PL+LGA D+AF R+NNI F +VE GAGTG TV SS +
Sbjct: 86 NYLMPLMLGASDMAFARLNNISFWLLVPSLILILTSALVEAGAGTGWTVKKICSSKM 142
>UniRef50_Q11EK8 Cluster: Cytochrome c oxidase, subunit I; n=5;
Proteobacteria|Rep: Cytochrome c oxidase, subunit I -
Mesorhizobium sp. (strain BNC1)
Length = 845
Score = 79.0 bits (186), Expect = 1e-13
Identities = 56/219 (25%), Positives = 84/219 (38%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
I+ L L++R +L P + + YN I T H L+P +L
Sbjct: 55 ILAGILGLIMRTQLAVPENDLVGQDFYNQIFTVHGTTMMFLFAVPVVEALGVM-LLPQML 113
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
A D+ FPR++ + G +YPPL+ G + D +
Sbjct: 114 AARDLPFPRLSAFAIWAYIVGGLVFFSTVFYDLAPKGGWFMYPPLTLKEYSPGDNADFWL 173
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ IS+ S ++P+F A+ I A A
Sbjct: 174 LGIGFIEISAIAGAIEIIVGTLRTRPPGMSLTRMPIFAWAMLIFAAMIMIAFPAVILATM 233
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
+L +R+ FF GGDP+L+QHLF F GHPEVYI+
Sbjct: 234 LLEIERSFGWPFFTAERGGDPLLWQHLFWFFGHPEVYII 272
>UniRef50_Q7NQZ0 Cluster: Cytochrome o ubiquinol oxidase, subunit I;
n=22; Bacteria|Rep: Cytochrome o ubiquinol oxidase,
subunit I - Chromobacterium violaceum
Length = 680
Score = 78.6 bits (185), Expect = 1e-13
Identities = 55/194 (28%), Positives = 78/194 (40%)
Frame = +3
Query: 153 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
Y+ I TAH N +VPL +GA D+AFP +N++ F
Sbjct: 100 YDQIFTAHGVIMIIFMAMPFMTGLM-NIVVPLQIGARDVAFPFLNSLSFWLLVSAVILVN 158
Query: 333 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 512
V N A TG YPPL+ VD I++L ++GI +
Sbjct: 159 LSLGVGNFARTGWVAYPPLAELGFSPDVGVDYYIWALQISGIGTTLTAINFLVTVIKMRA 218
Query: 513 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 692
+P+F GA+ +L DR L+ FF GG+ ++Y +
Sbjct: 219 PGMKLMDMPIFTWTCTWANVLIATSFPILTGALAMLALDRYLDFHFFTAELGGNAMMYLN 278
Query: 693 LF*FXGHPEVYILI 734
LF GHPEVYIL+
Sbjct: 279 LFWAWGHPEVYILV 292
>UniRef50_Q9WWR2 Cluster: Ubiquinol oxidase subunit 1 (EC 1.10.3.-)
(Ubiquinol oxidase polypeptide I) (Cytochrome o subunit
1) (Oxidase BO(3) subunit 1); n=240; Bacteria|Rep:
Ubiquinol oxidase subunit 1 (EC 1.10.3.-) (Ubiquinol
oxidase polypeptide I) (Cytochrome o subunit 1) (Oxidase
BO(3) subunit 1) - Pseudomonas putida
Length = 672
Score = 77.0 bits (181), Expect = 5e-13
Identities = 55/194 (28%), Positives = 76/194 (39%)
Frame = +3
Query: 153 YNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXX 332
Y+ I TAH N VPL +GA D+AFP +N++ F
Sbjct: 99 YDQIFTAHGVIMIIFMAMPFFTGLM-NLAVPLQIGARDVAFPFLNSLSFYLLLAGVLLVN 157
Query: 333 XXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXX 512
V A TG YPPL+ G VD I++L L+G+ +
Sbjct: 158 ISLGVGEFAKTGWVAYPPLAGIQYSPGVGVDYYIWALQLSGLGTTLTGVNFLVTVMKMRA 217
Query: 513 XXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQH 692
+P+F A+ +L DR L+ F GG+P++Y +
Sbjct: 218 PGMKLMDMPIFTWTCTWANVLIVASFPILTAALALLTVDRYLDFHIFTNELGGNPMMYVN 277
Query: 693 LF*FXGHPEVYILI 734
LF GHPEVYILI
Sbjct: 278 LFWAWGHPEVYILI 291
>UniRef50_P39481 Cluster: Quinol oxidase subunit 1/3; n=5;
Sulfolobaceae|Rep: Quinol oxidase subunit 1/3 -
Sulfolobus acidocaldarius
Length = 788
Score = 76.2 bits (179), Expect = 8e-13
Identities = 65/226 (28%), Positives = 93/226 (41%), Gaps = 1/226 (0%)
Frame = +3
Query: 60 GLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*L 239
G+ + IIG+ + LIR +L + A Y+ VT H N L
Sbjct: 27 GIVALIIGSVNAALIRDQLSFNN--LNAVDYYDA-VTLHGIFMIFFVVMPLSTGFA-NYL 82
Query: 240 VPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLS-SNIAHRGR 416
VP ++GA D+ +P+IN + F ++ G +Y PLS + G
Sbjct: 83 VPRMIGAHDLYWPKINALSFWMLVPAVILAAISPLL-GAVDLGWYMYAPLSVETTVNYGL 141
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+L +L L+G+SS + ++PLFV TA
Sbjct: 142 GTNLIQIALILSGLSSTLTGVNFVMTITKMKKV--PYLKMPLFVWGFFTTAILMIIAMPS 199
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+ +R T FFD A GG P+L+Q LF F GHPEVYILI
Sbjct: 200 LTAGLVFAYLERLWGTPFFDSALGGSPVLWQQLFWFFGHPEVYILI 245
>UniRef50_Q9RR77 Cluster: Cytochrome c oxidase, subunit I; n=2;
Deinococcus|Rep: Cytochrome c oxidase, subunit I -
Deinococcus radiodurans
Length = 820
Score = 75.8 bits (178), Expect = 1e-12
Identities = 53/219 (24%), Positives = 80/219 (36%)
Frame = +3
Query: 78 IGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILG 257
+G L+L IR +L P + YN ++T HA N +PL LG
Sbjct: 49 LGGLLALAIRVQLALPEQTLLVGTTYNQVLTMHAAIMLFFFLIPLGLFGFGNYFLPLQLG 108
Query: 258 APDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIF 437
D+A PR+N G T Y PL+ + G SV +
Sbjct: 109 VRDVALPRLNTFAVWLFIASLILVVLGLFNGGAPSVGWTFYYPLTMDGNQTGVSVFMVAV 168
Query: 438 SLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITI 617
L+ G+ S ++P+F ++ T+ A +
Sbjct: 169 ILN--GLGSLLGSANFAATIVNLRAPGMGLWKMPVFAWSIFATSILQLLTLGGLTAAALL 226
Query: 618 LLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+ L S F+P GG P+LYQ F F HP VY+++
Sbjct: 227 TYLEIKLGLSMFNPGIGGVPVLYQQFFWFYSHPAVYVML 265
>UniRef50_A4WT83 Cluster: Cytochrome c, monohaem; n=3;
Rhodobacteraceae|Rep: Cytochrome c, monohaem -
Rhodobacter sphaeroides ATCC 17025
Length = 878
Score = 73.7 bits (173), Expect = 4e-12
Identities = 51/214 (23%), Positives = 84/214 (39%)
Frame = +3
Query: 90 LSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDI 269
L++L+R +L PG+ + +N T H L+P +LGA D+
Sbjct: 78 LAVLMRVQLAVPGNDFLSADRFNQFFTMHGSAMMFLFAVPMFEAISII-LLPALLGARDL 136
Query: 270 AFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHL 449
FPR++ + + + +G +YPPL++ G D+ + L
Sbjct: 137 PFPRLSAYGYWCFLIGGVFVMGSILFDAAPKSGWFMYPPLATQ--DEGLGSDIWLLGLSF 194
Query: 450 AGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTD 629
++S + +PL+ V + + +
Sbjct: 195 IEVASIAAAVELIVGVLKCRPPGMRVNLMPLYAWYVLVVGGMILFAFPPLIAGDLLFEME 254
Query: 630 RNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
R + FFDP GGDP+L+QHLF GHPEVYI+
Sbjct: 255 RGFDWPFFDPERGGDPLLWQHLFWIFGHPEVYII 288
>UniRef50_A6XEV4 Cluster: Cytochrome c oxidase subunit 1; n=1;
Munidopsis verrucosus|Rep: Cytochrome c oxidase subunit
1 - Munidopsis verrucosus
Length = 154
Score = 72.5 bits (170), Expect = 1e-11
Identities = 39/83 (46%), Positives = 48/83 (57%)
Frame = +3
Query: 384 PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGI 563
PL+S+IAH G SVD+AIFSLHLAG+SS + D++PLF+ AV I
Sbjct: 72 PLASSIAHAGASVDMAIFSLHLAGVSSILGSVNFMTTVINMRAKGMTLDRVPLFIWAVFI 131
Query: 564 TAFXXXXXXXXXAGAITILLTDR 632
T AGAIT+LLTDR
Sbjct: 132 TTVLLLLSLPVLAGAITMLLTDR 154
Score = 35.5 bits (78), Expect = 1.4
Identities = 18/42 (42%), Positives = 19/42 (45%)
Frame = +2
Query: 218 WRIWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKN 343
W IWKL P NK YKILT PL Y K+N
Sbjct: 28 WWIWKLINSANVSGPWYGFPANKQYKILTSAPLTYTPINKRN 69
>UniRef50_Q5P1W4 Cluster: Cytochrome c oxidase, subunit I; n=13;
Bacteria|Rep: Cytochrome c oxidase, subunit I - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 607
Score = 71.7 bits (168), Expect = 2e-11
Identities = 52/219 (23%), Positives = 86/219 (39%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
++ ++L++R +L + +YN + T H L+P +L
Sbjct: 114 VLAGIVALMMRTQLAVAENDFIGPALYNQLFTMHGTVMMFLFAVPAVEAMGIL-LLPNML 172
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGRSVDLAI 434
GA D+ FPR++ F V G + PPL++ G + D +
Sbjct: 173 GARDLPFPRLSAYAFWAYLVGGLVFFASIFVGWAPDGGWFMNPPLTTETYSPGYNADFWL 232
Query: 435 FSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAIT 614
+ IS+ + ++P+F A+ + A A
Sbjct: 233 LGIGFIEISAIAGAIEIIVGILRTRSPGMTLGRMPVFAWAMLVFALMIVFAFPAVILATA 292
Query: 615 ILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYIL 731
+L +R + FF GGDP+L+QHLF F GHPEVYI+
Sbjct: 293 LLELERAFHWPFFAAHLGGDPLLWQHLFWFFGHPEVYII 331
>UniRef50_Q5K464 Cluster: Putative DNA endonuclease; n=1;
Kluyveromyces thermotolerans|Rep: Putative DNA
endonuclease - Kluyveromyces thermotolerans (Yeast)
Length = 542
Score = 70.5 bits (165), Expect = 4e-11
Identities = 39/109 (35%), Positives = 58/109 (53%), Gaps = 2/109 (1%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ + G+ GT++S++IR EL PG+ L G Q++N +V HA
Sbjct: 21 FAIFCGMAGTAMSVIIRLELAAPGNQYLGGNHQLFNVLVVGHAVLMIFFLVMPALIGGFG 80
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TV 377
N L+PL++GA D++F R+NNI F +VE+GAGTG TV
Sbjct: 81 NYLLPLMIGASDMSFARLNNISFWLLPPALVCLVTSTLVESGAGTGWTV 129
>UniRef50_P11947 Cluster: Cytochrome c oxidase subunit 1; n=48;
Oligohymenophorea|Rep: Cytochrome c oxidase subunit 1 -
Tetrahymena pyriformis
Length = 698
Score = 70.1 bits (164), Expect = 5e-11
Identities = 44/126 (34%), Positives = 60/126 (47%), Gaps = 3/126 (2%)
Frame = +3
Query: 366 G*TVYPPLSSNIAHRG-RSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQ--L 536
G T P SSNI + G S D+ I S+ AGIS+ + +
Sbjct: 283 GWTFITPFSSNIKYTGVGSQDILILSVVFAGISTTISFTNLLITRRTLAMPGMRHRRVLM 342
Query: 537 PLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHP 716
P ++ +T A+ ++ DR+ T+FF+ A GGDPIL QHLF F GHP
Sbjct: 343 PFVTISIFLTLRMLATITPVLGAAVIMMAFDRHWQTTFFEYAYGGDPILSQHLFWFFGHP 402
Query: 717 EVYILI 734
EVY+LI
Sbjct: 403 EVYVLI 408
Score = 46.8 bits (106), Expect = 6e-04
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 2/83 (2%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLI--GAXQIYNTIVTAHAXXXXXXXXXXXXXXXXX 230
+ + +G+ G +L+ +IR EL +P S G Y +VTAH
Sbjct: 70 FSMVTGLSGAALATMIRMELAHPESPFFKGDSLRYLQVVTAHGLIMVFFVVVPILFGGFA 129
Query: 231 N*LVPLILGAPDIAFPRINNIRF 299
N L+P +G+ D+A+PR+N+I F
Sbjct: 130 NFLIPYHVGSKDVAYPRLNSIGF 152
>UniRef50_Q0AI64 Cluster: Cytochrome-c oxidase; n=3;
Proteobacteria|Rep: Cytochrome-c oxidase - Nitrosomonas
eutropha (strain C71)
Length = 703
Score = 69.7 bits (163), Expect = 7e-11
Identities = 49/168 (29%), Positives = 68/168 (40%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N+I +V + G YPP + + +
Sbjct: 144 NYVVPLQIGARDVAFPILNSISLWLTAAGAALVMISLVVGAFSTGGWFGYPPYTETLYNP 203
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD I+SL LA + S +PLF TA
Sbjct: 204 GIGVDYWIWSLTLASLGSTLTGINIAVTIYKKRAPGMKLYYMPLFTWTALCTAIMMIFAM 263
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
L DR L+ FF GG+ + + ++F GHPEVYILI
Sbjct: 264 PPLTVVTLQLALDRYLDFHFFTNGLGGNQMNFLNMFWLFGHPEVYILI 311
>UniRef50_A6C0L1 Cluster: Cytochrome c oxidase subunit I; n=1;
Planctomyces maris DSM 8797|Rep: Cytochrome c oxidase
subunit I - Planctomyces maris DSM 8797
Length = 606
Score = 68.9 bits (161), Expect = 1e-10
Identities = 52/210 (24%), Positives = 78/210 (37%), Gaps = 14/210 (6%)
Frame = +3
Query: 147 QIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXXXXXXXXX 326
+ Y + T HA N L+PL++GA D+AFP++N + +
Sbjct: 90 EFYTMLFTMHATVMIFLVIIPILAGMFGNFLIPLMIGADDMAFPKLNMLSYWFMWPAIAC 149
Query: 327 XXXXXIVENGAGTG*TVYP---PLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXXXXXXX 497
G G T YP L+ G + + + G SS
Sbjct: 150 FGMSFKYAGGPAAGWTSYPVLADLAQAAPGSGTAQTYWLLGVTFVGFSSMMGSINYMTTI 209
Query: 498 XXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAG---- 665
+F +LP+ + + ITA + + DR T FF P+G
Sbjct: 210 INMRAPGMTFFRLPMTIWGLFITAILQAFALPVLTAGGFMQVADRLFGTCFFYPSGLVIN 269
Query: 666 -------GGDPILYQHLF*FXGHPEVYILI 734
GG P+L+QHLF F HP VYI++
Sbjct: 270 NAAPTVGGGQPLLWQHLFWFYSHPAVYIML 299
>UniRef50_Q1IUK7 Cluster: Cytochrome-c oxidase; n=2;
Acidobacteria|Rep: Cytochrome-c oxidase - Acidobacteria
bacterium (strain Ellin345)
Length = 595
Score = 68.5 bits (160), Expect = 2e-10
Identities = 59/222 (26%), Positives = 88/222 (39%), Gaps = 16/222 (7%)
Frame = +3
Query: 117 GNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIR 296
G PG ++ + Y +++T H N +P+ +GA D+AFPR N +
Sbjct: 75 GAPGDVM-TPEYYLSLLTMHGTLMVFFVLTNAPFAAFGNYFLPIQIGAEDMAFPRFNMMS 133
Query: 297 FXXXXXXXXXXXXXXIVENGAG-TG*TVYPPLSS--NIAHRGRSVDLAIFSLHLA--GIS 461
F + +G +G T Y LS+ A G + ++ + +A I+
Sbjct: 134 FWTTFAAFCVLIAAFFIPDGPPISGWTAYATLSAVGGDAGPGMAYGQTLWGISIAIFCIA 193
Query: 462 SXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLN 641
S S ++P+ A IT+ A +L DR
Sbjct: 194 SLLGSLNFIATTLDLRTKGMSLMRMPICTWAWFITSCIALLAFAVLLPACILLCLDRVAG 253
Query: 642 TSFFDPAG-----------GGDPILYQHLF*FXGHPEVYILI 734
TSFF P+G GG +L+QHLF F GHPEVYI I
Sbjct: 254 TSFFIPSGLVFNDHVIPHGGGSALLWQHLFWFFGHPEVYIAI 295
>UniRef50_Q05FH1 Cluster: Cytochrome O ubiquinol oxidase subunit I;
n=1; Candidatus Carsonella ruddii PV|Rep: Cytochrome O
ubiquinol oxidase subunit I - Carsonella ruddii (strain
PV)
Length = 606
Score = 68.5 bits (160), Expect = 2e-10
Identities = 45/168 (26%), Positives = 70/168 (41%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N ++PL +G+ D+AFP +N + F I+ A TG YPPLS
Sbjct: 119 NIIIPLQIGSKDVAFPSLNLLSFWLTFFSVLLINISLIIGEFAKTGWLGYPPLSEKTFSP 178
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
VD +S+ ++GI + F+++ +F+ +
Sbjct: 179 WVGVDYWNWSIQISGIGTIISSINFITTILKLRKKKLFFNKISIFMWTCLCSNILILISF 238
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+ + DR L+T F+ GG +LY +L GHPEVYILI
Sbjct: 239 PILTILLFQIFLDRTLSTHFYSSFYGGQQMLYINLIWAWGHPEVYILI 286
>UniRef50_Q5V018 Cluster: Cytochrome c oxidase subunit I; n=3;
Halobacteriaceae|Rep: Cytochrome c oxidase subunit I -
Haloarcula marismortui (Halobacterium marismortui)
Length = 854
Score = 67.7 bits (158), Expect = 3e-10
Identities = 57/232 (24%), Positives = 88/232 (37%), Gaps = 13/232 (5%)
Frame = +3
Query: 75 IIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLIL 254
+ G L+LL R EL + G+ + YN V+ H N LVPL +
Sbjct: 38 VFGGVLALLFRLELISSGADLLGSMGYNQAVSTHGLLMVFWFISPFAFGFA-NYLVPLQI 96
Query: 255 GAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSN--IAHRGRSVDL 428
GA D+AFPR+N + + G T+Y PL++ I G
Sbjct: 97 GADDLAFPRLNALSYWLYLFSGILMGVSFFQGTTFAGGWTMYAPLNTPAYIPGEGLGATS 156
Query: 429 AIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGA 608
+ +L + + +P+F ++ +T + A
Sbjct: 157 VVLALIMFTAAVTLGSVNFLTTMYRMRAEGLRMRDIPIFSLSINLTVWMMLFAFAALLAA 216
Query: 609 ITILLTDRNLNTSFF-----------DPAGGGDPILYQHLF*FXGHPEVYIL 731
+ IL +D L T++F D G +L+ HLF F GHPEVYI+
Sbjct: 217 LMILASDHILGTTYFQYSIDGTTMATDADNPGASLLWAHLFWFFGHPEVYIV 268
>UniRef50_Q6KZG3 Cluster: Cytochrome c oxidase polypeptide I/III;
n=2; Thermoplasmatales|Rep: Cytochrome c oxidase
polypeptide I/III - Picrophilus torridus
Length = 841
Score = 65.3 bits (152), Expect = 1e-09
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 1/204 (0%)
Frame = +3
Query: 126 GSLIGAXQIYNTIVTAHAXXXXXXXXXXXXXXXXXN*LVPLILGAPDIAFPRINNIRFXX 305
G + A Q YN +VT H L+PL +G+ D+ +PR+N + +
Sbjct: 76 GRFLDALQ-YNQLVTIHGLTMLIWFLGPLGTGFGIY-LIPLAIGSRDMIYPRMNALGYWL 133
Query: 306 XXXXXXXXXXXXIVENG-AGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISSXXXXXX 482
+ G TG TVY PLSS D A ++ L GI +
Sbjct: 134 FLFSGIMLWSGFFLPGGNLDTGWTVYEPLSSFKFTPYLGADTAAAAVVLRGIGTIIASTE 193
Query: 483 XXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPA 662
LPLFV AV A G +LL ++ S++
Sbjct: 194 ILATIFKARAKGYRMMNLPLFVWAVFWVAAISWFVFPEITGLFFLLLVGNLMHASYYISN 253
Query: 663 GGGDPILYQHLF*FXGHPEVYILI 734
GG +++++LF + GHPEVY+L+
Sbjct: 254 YGG-ALMWENLFWYFGHPEVYLLL 276
>UniRef50_Q85HI4 Cluster: Cytochrome c oxidase subunit I; n=7;
Echinoida|Rep: Cytochrome c oxidase subunit I -
Echinometra oblonga
Length = 386
Score = 62.1 bits (144), Expect = 1e-08
Identities = 27/34 (79%), Positives = 29/34 (85%)
Frame = +3
Query: 633 NLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
N T+FFDPAGGGD IL+QHLF F GHPEVYILI
Sbjct: 191 NYYTTFFDPAGGGDXILFQHLFXFFGHPEVYILI 224
>UniRef50_A5FXH8 Cluster: Cytochrome-c oxidase; n=1; Acidiphilium
cryptum JF-5|Rep: Cytochrome-c oxidase - Acidiphilium
cryptum (strain JF-5)
Length = 689
Score = 60.5 bits (140), Expect = 4e-08
Identities = 42/168 (25%), Positives = 67/168 (39%)
Frame = +3
Query: 231 N*LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHR 410
N +VPL +GA D+AFP +N + V + + G PL+
Sbjct: 143 NIIVPLQIGARDMAFPYLNAVGLWLTAVAAALVMLSLFVGDFSHDGWIGLIPLTELPYSP 202
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G VD ++++ + + + ++ +LP V T
Sbjct: 203 GVGVDYWMWAIQIGSVGTTLNAINMIATIVKLRAPGMTWSRLPFVVWTSLTTNIIALTAF 262
Query: 591 XXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
A+ +L DR L T FF GG+ +LY +LF GHPEVY ++
Sbjct: 263 PILGVALAMLGADRYLGTHFFTAGLGGNLMLYTNLFWIWGHPEVYFVV 310
>UniRef50_A1XI88 Cluster: Cytochrome c oxidase subunit I; n=1;
Myrmarachne sp. G FSC-2006|Rep: Cytochrome c oxidase
subunit I - Myrmarachne sp. G FSC-2006
Length = 129
Score = 59.3 bits (137), Expect = 1e-07
Identities = 28/41 (68%), Positives = 31/41 (75%)
Frame = +3
Query: 342 IVENGAGTG*TVYPPLSSNIAHRGRSVDLAIFSLHLAGISS 464
+VE G G G TVYPPL+S + H G SVD AIFSLHLAG SS
Sbjct: 12 MVEMGVGAGWTVYPPLASVVGHGGSSVDFAIFSLHLAGASS 52
>UniRef50_O99652 Cluster: Cytochrome c oxidase subunit I; n=1;
Tetragona dorsalis ziegleri|Rep: Cytochrome c oxidase
subunit I - Tetragona dorsalis ziegleri
Length = 111
Score = 54.4 bits (125), Expect = 3e-06
Identities = 29/69 (42%), Positives = 38/69 (55%)
Frame = +3
Query: 528 DQLPLFV*AVGITAFXXXXXXXXXAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FX 707
DQ+ LF ++ IT AG IT+LL+DRN N FF GG PIL+Q++
Sbjct: 12 DQINLFSWSISITVNLSILSLPMLAGTITMLLSDRNFNKFFFILIGGEYPILHQYMLWLF 71
Query: 708 GHPEVYILI 734
GH +V LI
Sbjct: 72 GHTDVLFLI 80
>UniRef50_Q2N1P8 Cluster: Cytochrome c oxidase subunit I; n=2;
Eutetramorium sp. BLF m1|Rep: Cytochrome c oxidase
subunit I - Eutetramorium sp. BLF m1
Length = 201
Score = 50.0 bits (114), Expect = 6e-05
Identities = 22/41 (53%), Positives = 33/41 (80%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLIGAXQIYNTIVTAHA 179
+ + SG+IG+S+S+LIR EL GS++ + QIYNT+VT+HA
Sbjct: 6 FAIWSGLIGSSMSMLIRLELETCGSVLRSEQIYNTLVTSHA 46
Score = 40.3 bits (90), Expect = 0.048
Identities = 27/78 (34%), Positives = 35/78 (44%)
Frame = +3
Query: 411 GRSVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXX 590
G L IFSL + S + D++ L ++ ITA
Sbjct: 124 GSXXXLXIFSLXIXXXSXIFSAXNFISXIINMRHTMLTMDKISLLSWSILITAVLLLLSL 183
Query: 591 XXXAGAITILLTDRNLNT 644
AGAIT+LLTDRN+NT
Sbjct: 184 PVLAGAITMLLTDRNMNT 201
>UniRef50_Q7YI87 Cluster: Cytochrome oxidase subunit I; n=1;
Celatoblatta vulgaris|Rep: Cytochrome oxidase subunit I
- Celatoblatta vulgaris
Length = 134
Score = 48.4 bits (110), Expect = 2e-04
Identities = 25/51 (49%), Positives = 29/51 (56%)
Frame = +2
Query: 548 MSCRDYSXXXXXXTTCFSWSYYNIINRSKLKYIIF*SCWRRRPNFISTFIL 700
M C +YS +TC WSYYN IN SKLKYI+F F+ST IL
Sbjct: 84 MICSNYSFTIIIVSTCSCWSYYNTINWSKLKYILFWPSSSWGSYFMSTPIL 134
>UniRef50_Q94WV3 Cluster: Cytochrome oxidase subunit I; n=1;
Pachymerium ferrugineum|Rep: Cytochrome oxidase subunit
I - Pachymerium ferrugineum
Length = 219
Score = 47.2 bits (107), Expect = 4e-04
Identities = 37/140 (26%), Positives = 44/140 (31%)
Frame = +2
Query: 224 IWKLXXXXXXXXXXXXXPTNK*YKILTPTPLPYIINFKKNCRKWCRNRMNSLPPTFI*YR 403
I KL P NK +KIL TPL Y N C K C + +NSLP Y
Sbjct: 62 IRKLNTPSNIGSTSHGFPPNKQFKILIITPLTYTTNSIYGCSKRCSHSVNSLPAPCCKYL 121
Query: 404 T*RKIRRSCYFFTTFSXXXXXXXXXXXXXXXXXXTXXXXXXXXXXXXCMSCRDYSXXXXX 583
T R +F T CM +YS
Sbjct: 122 TLGPFRSYNHFCPTSCSSVFNSSLNQLYYNNHQYARYSNNPWTNPSVCMKSNNYSCTSTS 181
Query: 584 XTTCFSWSYYNIINRSKLKY 643
+ S+YNI K KY
Sbjct: 182 FSPSIGSSHYNITYWPKPKY 201
>UniRef50_Q6XYE8 Cluster: Cytochrome c oxidase subunit I; n=2;
Endopterygota|Rep: Cytochrome c oxidase subunit I -
Copitarsia incommoda
Length = 150
Score = 43.6 bits (98), Expect = 0.005
Identities = 22/34 (64%), Positives = 23/34 (67%)
Frame = +2
Query: 632 KLKYIIF*SCWRRRPNFISTFILIFXTS*SLYFN 733
K KYIIF S W F+STFILIF T SLYFN
Sbjct: 7 KFKYIIFWSSWSSWSYFMSTFILIFWTPSSLYFN 40
>UniRef50_P03876 Cluster: Putative COX1/OXI3 intron 2 protein; n=2;
Saccharomycetaceae|Rep: Putative COX1/OXI3 intron 2
protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 854
Score = 41.5 bits (93), Expect = 0.021
Identities = 20/41 (48%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTAHA 179
+ SG+ GT++SL+IR EL PGS L G Q++N +V HA
Sbjct: 23 IFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLVVGHA 63
>UniRef50_O86945 Cluster: Sub-unit I of an aa3-type cytochrome
oxidase; n=1; Acidithiobacillus ferrooxidans|Rep:
Sub-unit I of an aa3-type cytochrome oxidase -
Thiobacillus ferrooxidans (Acidithiobacillus
ferrooxidans)
Length = 627
Score = 39.9 bits (89), Expect = 0.063
Identities = 36/166 (21%), Positives = 59/166 (35%)
Frame = +3
Query: 237 LVPLILGAPDIAFPRINNIRFXXXXXXXXXXXXXXIVENGAGTG*TVYPPLSSNIAHRGR 416
L+PL+LG ++ FP++ + + G TG YPPL+ N G
Sbjct: 180 LIPLMLGTRNVVFPKLLGLSWWLLPPATFAVFMSPTT-GGFQTGWWGYPPLAQN---SGS 235
Query: 417 SVDLAIFSLHLAGISSXXXXXXXXXXXXXXXXXXXSFDQLPLFV*AVGITAFXXXXXXXX 596
+ + ++S S ++P+FV + A
Sbjct: 236 GIVWYVLGAATILVASLLGAINIAGTMVYMRAKGMSLGRVPIFVWGLFAAATTLVVESPA 295
Query: 597 XAGAITILLTDRNLNTSFFDPAGGGDPILYQHLF*FXGHPEVYILI 734
+ L+D + F+ G P+ Y F F HPEVY+ I
Sbjct: 296 TYTGALMDLSDMIAGSHFYT-GPTGHPLAYLDQFWFLFHPEVYVFI 340
>UniRef50_P03877 Cluster: Intron-encoded DNA endonuclease aI3
precursor (DNA endonuclease I- SceIII) [Contains:
Truncated non-functional cytochrome oxidase 1; DNA
endonuclease aI3 (EC 3.1.-.-) (Intron-encoded
endonuclease I-SceIII)]; n=5; Saccharomycetales|Rep:
Intron-encoded DNA endonuclease aI3 precursor (DNA
endonuclease I- SceIII) [Contains: Truncated
non-functional cytochrome oxidase 1; DNA endonuclease
aI3 (EC 3.1.-.-) (Intron-encoded endonuclease I-SceIII)]
- Saccharomyces cerevisiae (Baker's yeast)
Length = 403
Score = 36.7 bits (81), Expect = 0.59
Identities = 18/37 (48%), Positives = 26/37 (70%), Gaps = 2/37 (5%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIV 167
+ SG+ GT++SL+IR EL PGS L G Q++N +V
Sbjct: 23 IFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNVLV 59
>UniRef50_Q35062 Cluster: CoxI intron2 ORF; n=2; Marchantia
polymorpha|Rep: CoxI intron2 ORF - Marchantia polymorpha
(Liverwort)
Length = 802
Score = 35.5 bits (78), Expect = 1.4
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLI--GAXQIYN 158
+G +G++GT S+LIR EL PG+ I G Q+YN
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_Q0R4Y4 Cluster: Maturase-like protein; n=2; Eukaryota|Rep:
Maturase-like protein - Pellia epiphylla
Length = 843
Score = 35.5 bits (78), Expect = 1.4
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Frame = +3
Query: 57 WGLXSGIIGTSLSLLIRAELGNPGSLI--GAXQIYN 158
+G +G++GT S+LIR EL PG+ I G Q+YN
Sbjct: 24 FGAIAGVMGTCFSVLIRMELAQPGNQILGGNHQLYN 59
>UniRef50_A5H2T8 Cluster: Cytochrome c oxidase subunit 1; n=1;
Pichia guilliermondii|Rep: Cytochrome c oxidase subunit
1 - Pichia guilliermondii (Yeast) (Candida
guilliermondii)
Length = 168
Score = 34.7 bits (76), Expect = 2.4
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAEL--GNPGSLIGAXQIYNTIVTAHA 179
+ + ++GT +S++IR EL GN G Q YN ++T HA
Sbjct: 1 MIASMVGTGMSVIIRMELSSGNSQFFHGNNQAYNVLITGHA 41
>UniRef50_P03875 Cluster: Putative COX1/OXI3 intron 1 protein; n=1;
Saccharomyces cerevisiae|Rep: Putative COX1/OXI3 intron
1 protein - Saccharomyces cerevisiae (Baker's yeast)
Length = 834
Score = 34.7 bits (76), Expect = 2.4
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = +3
Query: 63 LXSGIIGTSLSLLIRAELGNPGS--LIGAXQIYNTIVTA 173
+ SG+ GT++SL+IR EL PGS L G Q++N T+
Sbjct: 23 IFSGMAGTAMSLIIRLELAAPGSQYLHGNSQLFNGAPTS 61
>UniRef50_Q8II85 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium falciparum (isolate 3D7)
Length = 1420
Score = 32.7 bits (71), Expect = 9.6
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = -3
Query: 631 RSVNNIVIAPAKTGSDNNNKNAVIPTAHTNKGN*SNDILFN 509
+++NN +I S NNN N++ T TN + +N+I +N
Sbjct: 1038 KTINNNIINDTSQSSYNNNMNSIQNTNRTNSSSSNNNISYN 1078
>UniRef50_Q5ABE2 Cluster: Putative uncharacterized protein CLN3;
n=1; Candida albicans|Rep: Putative uncharacterized
protein CLN3 - Candida albicans (Yeast)
Length = 785
Score = 32.7 bits (71), Expect = 9.6
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = -3
Query: 685 YKIGSPPPAGSKNDVFKFRSVNN---IVIAPAKTGSDNNNKNAVIPTAH 548
Y++ +PP + +KN K S NN IA T ++NNN N+ +P H
Sbjct: 572 YQMVTPPNSANKNSN-KSNSANNNNTTTIATTTTTTNNNNNNSQLPAPH 619
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 515,478,091
Number of Sequences: 1657284
Number of extensions: 8337859
Number of successful extensions: 18876
Number of sequences better than 10.0: 108
Number of HSP's better than 10.0 without gapping: 17245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18577
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 59677054775
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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