Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P06_F_G22
(772 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p... 177 2e-45
SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces po... 29 0.97
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub... 29 0.97
SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr... 28 1.7
SPAC19A8.08 |upf2||nonsense-mediated decay protein Upf2|Schizosa... 27 3.9
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 27 3.9
SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces p... 26 5.2
SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit ... 26 6.9
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo... 26 6.9
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 26 6.9
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P... 25 9.1
>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 521
Score = 177 bits (430), Expect = 2e-45
Identities = 89/167 (53%), Positives = 117/167 (70%), Gaps = 8/167 (4%)
Frame = +3
Query: 294 KKDNFNSQAPTTKLTSYQPTEKLFKRYINKINV-DKYEPMSNNTEKFIDQNDRK------ 452
+++NF + + +K+ S RY+N I + D++E T + +
Sbjct: 47 RQENFGNNS--SKINSVNDHVSTLSRYVNNIKLNDRFEAEGFRTRGLLILHTFTFSCLIV 104
Query: 453 -KDNERIRIKDKHDRATAEQVMDPRTKMILFKLLNRGIINEINGCISTGKEANVYHATSK 629
+ ++ IKDK DRAT+EQV+DPRT+MIL KL+N G I+EINGCISTGKEANVYHAT++
Sbjct: 105 LTNKDKSSIKDKSDRATSEQVLDPRTRMILLKLINNGTISEINGCISTGKEANVYHATNE 164
Query: 630 DGRDFAIKIFKTSILVFKDRDKYVSGEYRFRNGYCXSNPRKMVRTWA 770
DG+ FAIKI+KTSILVFKDRD+YVSGE+RFR+GY NPRKMVR WA
Sbjct: 165 DGKHFAIKIYKTSILVFKDRDRYVSGEFRFRHGYNKRNPRKMVRLWA 211
>SPBC1703.05 |||protein kinase, RIO family|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 28.7 bits (61), Expect = 0.97
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = +3
Query: 531 MILFKLLNRGIINEINGCISTGKEANVYHATSKDGRDFAIKIFKTSILVFK 683
+ L L R + + I GKE++VY + G+ + +KI + + F+
Sbjct: 75 LALKALSKRASVYSVGNQIGVGKESDVYVVGDQKGKQYILKIHRLGRISFR 125
>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 28.7 bits (61), Expect = 0.97
Identities = 15/59 (25%), Positives = 25/59 (42%)
Frame = +3
Query: 435 DQNDRKKDNERIRIKDKHDRATAEQVMDPRTKMILFKLLNRGIINEINGCISTGKEANV 611
D +N RIR+ E P ++ K+ RG+ N + GC+ +G +V
Sbjct: 181 DAKSVPSENGRIRVSMSPQN---EINFTPENPAVMEKIRKRGVCNSVEGCLYSGSPKSV 236
>SPBC215.06c |||human LYHRT homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 178
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/82 (23%), Positives = 41/82 (50%), Gaps = 10/82 (12%)
Frame = +3
Query: 342 YQPTEKLFKRYI---NKINVDKYEPMSNN-------TEKFIDQNDRKKDNERIRIKDKHD 491
Y+PT+K K+ N +N + P ++N T+ +D+N++ K+N++ + +
Sbjct: 60 YRPTKKELKKAKMNGNAVNSKELSPNTDNQNTPAGPTKHSLDENEKDKENKKSKKETVSS 119
Query: 492 RATAEQVMDPRTKMILFKLLNR 557
A + ++ L+KLL +
Sbjct: 120 PAEQLLALTQNQEISLYKLLKK 141
>SPAC19A8.08 |upf2||nonsense-mediated decay protein
Upf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1049
Score = 26.6 bits (56), Expect = 3.9
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 3/35 (8%)
Frame = -1
Query: 718 NRYSP---DTYLSRSLNTNIDVLNILMAKSRPSFE 623
NR +P TYL +SLN+ +D L + K + FE
Sbjct: 259 NRLNPVVWRTYLRKSLNSYVDKLEVYCQKRKSLFE 293
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 26.6 bits (56), Expect = 3.9
Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
Frame = +3
Query: 399 YEPMSN-NTEKFIDQNDRKKDNERIRIKDKHDRATAEQVMDPRTKMILFKLLNRGIINE 572
YE S+ TE+ D +R++ ER+R KD + AT E V D +K +L R + ++
Sbjct: 167 YEKSSDPETERLNDLREREEFEERLRRKDL-EAATNEFVEDYSSKFSSEELALRKLADD 224
>SPBC29A10.05 |exo1|mut2|exonuclease I Exo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 5.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 381 KINVDKYEPMSNNTEKFIDQNDRKKDNERIRIKDKHDRATAE 506
+ V KY + NTEK ID+ + N K D A+ +
Sbjct: 449 RTGVSKYFKLQKNTEKEIDEQVPSQSNNTTPTSAKSDSASPQ 490
>SPBC36B7.03 |sec63||ER protein translocation subcomplex subunit
Sec63 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 6.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 3/46 (6%)
Frame = +3
Query: 318 APTTKLTSYQPTEKLFKRYINKI---NVDKYEPMSNNTEKFIDQND 446
A + +LTS P EK K YI K+ ++++ + + NT + + Q+D
Sbjct: 252 ASSKELTSLVPNEKNPKEYILKLLFDHLNRKKTNNFNTHQILSQSD 297
>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
Wis4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1401
Score = 25.8 bits (54), Expect = 6.9
Identities = 14/30 (46%), Positives = 18/30 (60%)
Frame = +3
Query: 273 DPTQGTKKKDNFNSQAPTTKLTSYQPTEKL 362
D T+ TK+ +NF S P T S Q +EKL
Sbjct: 53 DSTESTKRSENFVSHIPLTPSHSGQ-SEKL 81
>SPAC23C4.19 |spt5||transcription elongation factor
Spt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 990
Score = 25.8 bits (54), Expect = 6.9
Identities = 11/47 (23%), Positives = 23/47 (48%)
Frame = +3
Query: 378 NKINVDKYEPMSNNTEKFIDQNDRKKDNERIRIKDKHDRATAEQVMD 518
N ++K E + N ++ ND+K+D + + ++ A E+ D
Sbjct: 70 NDTTINKGEDGNENEVDNVNNNDKKEDEDNVEENEEEADANEEEEED 116
>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 9.1
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = +3
Query: 585 ISTGKEANVYHATSKDG-RDFAIKIFKTSILVFKDRDKYVSGE 710
I G + V AT K +++AIK+ +V +++ KYV+ E
Sbjct: 60 IGDGSFSKVRRATDKKSWKEYAIKVLDKKYIVKENKVKYVNIE 102
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,753,015
Number of Sequences: 5004
Number of extensions: 51640
Number of successful extensions: 159
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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