Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G21
         (750 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0813 - 24853119-24854480,24854711-24855442,24855556-248559...    31   0.98 
11_06_0346 - 22549699-22549721,22549857-22549999,22550100-225521...    29   5.2  
05_06_0268 + 26792845-26792891,26793050-26793830                       28   6.9  
04_03_0133 - 11653859-11653962,11658466-11658979                       28   6.9  
05_03_0003 - 7298555-7298841,7299199-7299386,7299484-7299683,729...    28   9.1  
03_02_0295 + 7178921-7179451,7180083-7180448,7181316-7181450,718...    28   9.1  

>06_03_0813 -
           24853119-24854480,24854711-24855442,24855556-24855962,
           24856091-24856359,24856681-24856733,24857019-24857078,
           24857309-24857363,24858080-24858155,24858225-24858801
          Length = 1196

 Score = 31.1 bits (67), Expect = 0.98
 Identities = 16/78 (20%), Positives = 39/78 (50%), Gaps = 4/78 (5%)
 Frame = +3

Query: 180 HKGHESMHTTMVLILIGALVISQVVIVQWKKRHYRSYAFF----TMIAMWSIPVMISFKN 347
           H G+ S    + ++L+   ++S V+++ W K  + ++ F     T+ A++    +I F+ 
Sbjct: 358 HLGNASGLAVITVMLVTTCLMSLVIVLCWHKSIFLAFGFIIFFGTIEALYFSASLIKFRE 417

Query: 348 GWWRFVSIWSVFTLLTAL 401
           G W  + +  +F  +  +
Sbjct: 418 GAWVPIVLAFIFMAIMCI 435


>11_06_0346 -
           22549699-22549721,22549857-22549999,22550100-22552175,
           22552305-22552822
          Length = 919

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +3

Query: 123 QELTSEERLRYDHQKLHELHKGHESMHTTMVLILIGALVI---SQVVIVQW 266
           +ELTS ERL   H K+ +L  G   +     L L G L+     Q+V ++W
Sbjct: 566 KELTSLERLDISHTKISDLPSGVCRLPNLETLDLRGTLISQLPDQIVRIKW 616


>05_06_0268 + 26792845-26792891,26793050-26793830
          Length = 275

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 16/46 (34%), Positives = 23/46 (50%)
 Frame = -3

Query: 523 LKSKYTWKLLRHSSYYFGYPPNKTHLGVVADIGLIELFLMTRAVRS 386
           L  KY  K     S +F     K+H+ V  D  L+E+F   RA+R+
Sbjct: 59  LVEKYPHKYGDKVSLFFFCTETKSHILVCNDQDLVEMFAKHRAIRT 104


>04_03_0133 - 11653859-11653962,11658466-11658979
          Length = 205

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +3

Query: 120 YQEL-TSEERLRYDHQKLHELHKGHESMHTTMVLILIG 230
           Y+EL TS ERL   H+KL E H    S      LI +G
Sbjct: 21  YEELKTSHERLTISHEKLKEAHDNLLSTTQHEALIDVG 58


>05_03_0003 -
           7298555-7298841,7299199-7299386,7299484-7299683,
           7299774-7300038,7302403-7302512
          Length = 349

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 7/40 (17%), Positives = 21/40 (52%)
 Frame = +3

Query: 276 HYRSYAFFTMIAMWSIPVMISFKNGWWRFVSIWSVFTLLT 395
           H+  +  F ++  + +PV    K  ++ +  +W ++ +L+
Sbjct: 140 HFTGWLSFFLLVNYKLPVRPQTKRTYYEYTGLWHIYAILS 179


>03_02_0295 +
           7178921-7179451,7180083-7180448,7181316-7181450,
           7181533-7181606,7181960-7181999,7182178-7182223,
           7182398-7182477,7182585-7182760,7182848-7182973,
           7183338-7183430,7184135-7184260,7184815-7184884,
           7185262-7185344,7186216-7186329,7186884-7186983,
           7187557-7187583
          Length = 728

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = -3

Query: 736 VRIPHNAAIFQGTAYESIINCDLSVWFFEIFAIAKYKSQCFKAL 605
           + I       +G AYE++ NCDL+  +++  A  K    C++AL
Sbjct: 343 INIKAAICFLRGKAYEALDNCDLARQWYK--AAVKADPLCYEAL 384


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,904,087
Number of Sequences: 37544
Number of extensions: 369409
Number of successful extensions: 800
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 789
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)