Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G21
         (750 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    24   1.3  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.3  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.3  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   9.3  

>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
 Frame = +2

Query: 635 RNCKDFKKPHTKITIYNALVRSTLEYCCI--VWNPYYEIY 748
           R  KDF +  TK  + NA VR  L   CI     P Y +Y
Sbjct: 43  RFSKDFYRQDTKNNLLNAYVRFKLVTDCIFVTSEPGYFLY 82


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 615 KHWDLYFAIAKISKNHTLRSQFIMLSY 695
           K +D++F  A  +KN+   +Q+I   Y
Sbjct: 119 KDFDIFFKTALWAKNNINEAQYIYSLY 145


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +3

Query: 615 KHWDLYFAIAKISKNHTLRSQFIMLSY 695
           K +D++F  A  +KN+   +Q+I   Y
Sbjct: 119 KDFDIFFKTALWAKNNINEAQYIYSLY 145


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 21.4 bits (43), Expect = 9.3
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 566 YYHYNKYETENYIFIEEQIY 507
           Y +YN Y   NY    +++Y
Sbjct: 327 YNNYNNYNNNNYNNYNKKLY 346


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,353
Number of Sequences: 438
Number of extensions: 4816
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)