Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P06_F_G18
         (644 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        31   0.19 
SPAC6B12.08 |mug185||DNAJ domain protein Jjj family|Schizosaccha...    26   5.3  
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch...    26   5.3  
SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter Atm1|S...    26   5.3  
SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22...    25   7.1  
SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|c...    25   7.1  
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    25   9.3  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.3  

>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 30.7 bits (66), Expect = 0.19
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +1

Query: 331  AIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKLKNGDCSNIVTEDIIKYR 507
            A++YS + ++      +   D +D+++ + E+L+S       KN + SN++   IIKYR
Sbjct: 1240 AVNYSLHSQLCEKFNVQESLDSIDDLIEKFEKLSS-----SEKNDNLSNLIERQIIKYR 1293


>SPAC6B12.08 |mug185||DNAJ domain protein Jjj
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 456 KERRLLQYCD*RYNKIS*RDKCAREKDFDP 545
           + +R +QYC  RYN++  RD   +  D DP
Sbjct: 173 QNQRQIQYCIQRYNELV-RDLIGKACDLDP 201


>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
           Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 775

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +2

Query: 128 FVGSKKKLLYYILIVPIMEL-FIKVYNSTCPTPLRDLTKIVNTWIDKFVS 274
           ++ S  + L+ I    I EL     YNS C TP  DL   +    D  VS
Sbjct: 310 YLASTMQSLFSIKEFAIHELNLFNTYNSVCQTPTTDLQCQLGKLADGLVS 359


>SPAC15A10.01 |atm1|SPAC8C9.18|ABC family iron transporter
           Atm1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 693

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -1

Query: 332 AISSNMFNRLQNLDTNIQISLQ 267
           ++SSN++  L NLD N  +S Q
Sbjct: 197 SVSSNVYQHLLNLDMNFHLSKQ 218


>SPAC4A8.12c |sds22||protein phosphatase regulatory subunit Sds22
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 332

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/50 (24%), Positives = 25/50 (50%)
 Frame = +1

Query: 307 RLNMLEDIAIDYSTYFKVDVLEGFKTVQDVVDNMLTRLEELTSVLQMVKL 456
           R   L+ + +  +   K++ +    T  D+ DN++ R+E L +V  +  L
Sbjct: 60  RFKNLQSLCLRQNQIKKIESVPETLTELDLYDNLIVRIENLDNVKNLTYL 109


>SPAP14E8.02 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 566

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -2

Query: 433 SSIPPASLTCCQQHLELF*ILPTRPL*NMLNNQLLYPP 320
           SS P       Q HL L+    + P  N+ +N+L+YPP
Sbjct: 210 SSPPSQDYQNDQNHLILYTNSESIPKLNLRSNELVYPP 247


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 13/53 (24%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
 Frame = -2

Query: 643 NCYHFVLQKNLQLSXLVFQLYQHYLIKTLIHW----TGSKSFSLAHLSLYDIL 497
           NC+  V+     L  +VF+L+   + KT  ++    TG K +  A  + + ++
Sbjct: 3   NCFFDVIANGQPLGRIVFKLFDDVVPKTAANFRALCTGEKGYGYAGSTFHRVI 55


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 472 SNIVTEDIIKYRREINVLGKRISTLSN 552
           SN+V +DI     EIN +  +  T+SN
Sbjct: 856 SNVVIKDISNQTHEINSVENKAETVSN 882


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,677,779
Number of Sequences: 5004
Number of extensions: 56648
Number of successful extensions: 149
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)